Wall clock time and date at job start Mon Mar 30 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47154 * 240.00231 * 3 2 1 5 5 H 1.48506 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47165 * 120.00099 * 3 2 1 7 7 C 1.37878 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47051 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46496 * 306.21003 * 10 9 7 12 12 C 1.53854 * 109.60806 * 185.95823 * 10 9 7 13 13 C 1.55136 * 106.90124 * 192.82769 * 12 10 9 14 14 S 1.83468 * 102.20321 * 42.11556 * 13 12 10 15 15 O 1.42102 * 109.47074 * 223.33960 * 14 13 12 16 16 C 1.54272 * 109.60706 * 66.45797 * 10 9 7 17 17 H 0.96994 * 120.00017 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.46662 * 60.00556 * 9 7 2 19 19 H 1.09001 * 109.47526 * 300.00280 * 9 7 2 20 20 H 1.09004 * 109.97746 * 312.18863 * 12 10 9 21 21 H 1.09000 * 109.97677 * 73.42662 * 12 10 9 22 22 H 1.09006 * 110.85800 * 283.94016 * 13 12 10 23 23 H 1.08997 * 110.85873 * 160.29341 * 13 12 10 24 24 H 1.09001 * 110.40303 * 29.08079 * 16 10 9 25 25 H 1.08997 * 110.40494 * 266.66591 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9429 -3.5436 -0.8297 12 6 1.4853 -4.9912 -0.1510 13 6 2.4897 -6.1254 0.1831 14 16 3.3655 -5.4492 1.6465 15 8 4.7598 -5.6920 1.5181 16 6 3.0230 -3.6783 1.3318 17 1 -0.4850 0.8400 0.0004 18 1 0.6242 -2.5567 -0.8904 19 1 0.6247 -2.5572 0.8896 20 1 0.6458 -5.0208 0.5436 21 1 1.1258 -5.1009 -1.1741 22 1 3.1820 -6.2866 -0.6433 23 1 1.9648 -7.0465 0.4364 24 1 2.4129 -3.2611 2.1329 25 1 3.9555 -3.1224 1.2343 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259516385.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:43 Heat of formation + Delta-G solvation = -83.727861 kcal Electronic energy + Delta-G solvation = -9798.022596 eV Core-core repulsion = 7901.325170 eV Total energy + Delta-G solvation = -1896.697426 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.91807 -36.71493 -34.74514 -31.42152 -28.76011 -26.19826 -23.64332 -20.93923 -18.61285 -18.17783 -16.86455 -16.68522 -16.05225 -14.93408 -14.76547 -14.39899 -14.16358 -13.69993 -13.33249 -12.98310 -12.65710 -12.44597 -12.31372 -12.13932 -11.68653 -11.28062 -11.06442 -10.76533 -10.54818 -9.18234 -8.20614 -6.29126 0.93318 1.36887 1.37716 1.46120 1.59201 2.38715 2.89558 3.12691 3.90261 4.00507 4.17842 4.32370 4.44645 4.88153 4.89883 5.04470 5.16536 5.31044 5.35331 5.50548 5.75012 5.85423 6.27784 6.85762 7.38879 8.90226 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.067362 B = 0.010213 C = 0.009256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.562432 B = 2741.042429 C = 3024.315543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.037 3.963 10 C -0.083 4.083 11 H 0.033 0.967 12 C -0.104 4.104 13 C -0.415 4.415 14 S 1.274 4.726 15 O -0.935 6.935 16 C -0.404 4.404 17 H 0.264 0.736 18 H -0.008 1.008 19 H 0.017 0.983 20 H 0.107 0.893 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.162 0.838 24 H 0.133 0.867 25 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -10.722 4.555 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.063 0.937 9 C -0.001 4.001 10 C -0.103 4.103 11 H 0.051 0.949 12 C -0.142 4.142 13 C -0.554 4.554 14 S 1.476 4.524 15 O -0.930 6.930 16 C -0.542 4.542 17 H 0.073 0.927 18 H 0.011 0.989 19 H 0.035 0.965 20 H 0.125 0.875 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.180 0.820 24 H 0.151 0.849 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.588 -11.097 5.352 12.334 hybrid contribution 1.237 2.124 -2.297 3.364 sum 1.826 -8.973 3.055 9.653 Atomic orbital electron populations 1.70034 1.07264 1.27714 1.51670 1.25790 0.95710 1.02611 0.95042 0.85707 0.78511 0.79288 0.78784 1.20156 1.20361 1.19438 1.21593 0.92907 0.92830 1.50321 0.93668 1.19034 0.93614 0.91573 0.95864 1.21717 0.97076 0.96856 0.94617 0.94867 1.22215 0.98279 0.89688 1.04029 1.28126 1.07128 1.06471 1.13636 1.69618 0.89680 0.87580 1.05524 1.92938 1.33134 1.81627 1.85344 1.27974 1.04838 1.17508 1.03880 0.92704 0.98928 0.96453 0.87482 0.90939 0.90876 0.82032 0.84851 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.29 21.45 0.28 -54.60 15 2 C 0.01 0.38 5.46 84.66 0.46 0.84 15 3 Si 0.95 44.54 29.54 68.60 2.03 46.57 15 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 7 C -0.54 -30.35 8.64 25.60 0.22 -30.13 15 8 H 0.05 2.55 7.67 -2.91 -0.02 2.53 15 9 C 0.04 1.84 4.35 29.85 0.13 1.97 15 10 C -0.08 -3.25 2.53 -10.07 -0.03 -3.27 15 11 H 0.03 1.43 8.14 -2.39 -0.02 1.42 15 12 C -0.10 -2.91 5.78 31.61 0.18 -2.73 15 13 C -0.41 -9.48 7.37 72.71 0.54 -8.95 15 14 S 1.27 32.55 14.66 -56.49 -0.83 31.72 15 15 O -0.93 -36.92 18.15 -148.98 -2.70 -39.62 15 16 C -0.40 -14.05 6.26 72.41 0.45 -13.60 15 17 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 18 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 19 H 0.02 0.86 8.01 -2.39 -0.02 0.85 15 20 H 0.11 2.48 8.11 -2.38 -0.02 2.46 15 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.07 1.95 8.14 -2.38 -0.02 1.94 15 23 H 0.16 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.13 4.31 7.80 -2.39 -0.02 4.30 15 25 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 Total: -1.00 -75.30 226.09 1.89 -73.40 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: 1.15 Total: -1.61 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 1.96 Total: -55.86 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.28 Total: -54.60 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -2.70 Total: -39.62 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 32.55 SS G_CDS: -0.83 Total: 31.72 kcal Total: -75.30 1.89 -73.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516385.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.324 kcal (2) G-P(sol) polarization free energy of solvation -75.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds