Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.96096 * 305.70060 * 10 9 7 12 12 C 1.53860 * 109.97325 * 184.45149 * 10 9 7 13 13 C 1.54291 * 108.90979 * 193.42149 * 12 10 9 14 14 S 1.83094 * 104.67469 * 27.89639 * 13 12 10 15 15 O 1.42099 * 109.47061 * 111.50983 * 14 13 12 16 16 C 1.55139 * 109.97059 * 66.94854 * 10 9 7 17 17 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 18 18 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 19 19 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 20 20 H 1.09001 * 109.60715 * 313.30466 * 12 10 9 21 21 H 1.09002 * 109.60777 * 73.46745 * 12 10 9 22 22 H 1.09004 * 110.36690 * 269.11142 * 13 12 10 23 23 H 1.09003 * 110.41877 * 146.71191 * 13 12 10 24 24 H 1.09001 * 110.85546 * 279.65087 * 16 10 9 25 25 H 1.09003 * 110.86023 * 43.09825 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9416 -3.5564 -0.8325 12 6 1.4911 -4.9984 -0.1128 13 6 2.4607 -6.1498 0.2262 14 16 3.6854 -5.4047 1.3651 15 8 3.5220 -5.9576 2.6639 16 6 3.0237 -3.6938 1.3411 17 1 -0.4850 -0.8401 0.0004 18 1 0.6247 -2.5570 0.8897 19 1 0.6242 -2.5567 -0.8903 20 1 0.6553 -5.0065 0.5868 21 1 1.1158 -5.1224 -1.1286 22 1 2.9523 -6.5102 -0.6775 23 1 1.9280 -6.9626 0.7199 24 1 3.8337 -2.9644 1.3372 25 1 2.3530 -3.5219 2.1831 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259516387.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -62.813462 kcal Electronic energy + Delta-G solvation = -9816.601548 eV Core-core repulsion = 7920.811038 eV Total energy + Delta-G solvation = -1895.790510 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -36.49845 -35.28410 -32.97514 -29.81713 -26.80517 -24.34424 -22.16640 -19.61529 -17.23212 -16.72503 -15.55842 -14.91300 -13.83115 -13.73220 -13.27593 -13.16189 -12.71735 -12.18687 -11.77484 -11.35142 -10.93155 -10.74668 -10.54834 -10.29715 -10.13145 -9.84904 -9.38603 -8.56367 -8.35902 -7.92986 -6.38221 -4.07626 2.06122 2.75041 3.42122 3.46234 3.58500 4.10051 4.51944 5.10183 5.18302 5.37386 5.44216 5.54965 5.77245 5.98842 6.13603 6.20585 6.57513 6.66384 6.78013 7.28854 7.44280 8.17312 8.43969 8.85557 9.64743 11.02256 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.068763 B = 0.010085 C = 0.009301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.097670 B = 2775.802281 C = 3009.604163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.597 4.597 8 H 0.053 0.947 9 C 0.018 3.982 10 C -0.068 4.068 11 H 0.080 0.920 12 C -0.116 4.116 13 C -0.425 4.425 14 S 1.181 4.819 15 O -0.873 6.873 16 C -0.386 4.386 17 H 0.268 0.732 18 H 0.006 0.994 19 H 0.010 0.990 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.115 0.885 23 H 0.087 0.913 24 H 0.121 0.879 25 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 -8.476 -2.542 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.902 3.098 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.635 4.635 8 H 0.071 0.929 9 C -0.020 4.020 10 C -0.088 4.088 11 H 0.099 0.901 12 C -0.154 4.154 13 C -0.563 4.563 14 S 1.383 4.617 15 O -0.869 6.869 16 C -0.525 4.525 17 H 0.079 0.921 18 H 0.024 0.976 19 H 0.028 0.972 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.134 0.866 23 H 0.106 0.894 24 H 0.140 0.860 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.828 -7.312 -1.992 11.635 hybrid contribution -2.076 -1.478 0.678 2.637 sum 6.752 -8.790 -1.314 11.162 Atomic orbital electron populations 1.70726 1.06985 1.30613 1.46881 1.25859 0.96555 1.02835 0.93875 0.83484 0.74475 0.74902 0.76944 1.21404 1.21454 1.21371 1.22070 0.94389 0.91683 1.55383 0.92880 1.19230 0.94015 0.92678 0.96033 1.21785 0.97941 0.94536 0.94516 0.90128 1.22181 0.98107 0.92599 1.02541 1.27948 1.11480 1.05017 1.11806 1.70207 1.10326 0.89005 0.92211 1.93078 1.83977 1.74183 1.35659 1.28047 1.07890 1.13481 1.03130 0.92113 0.97550 0.97214 0.92240 0.91021 0.86623 0.89381 0.86044 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.04 13.65 55.43 0.76 -27.28 15 2 C 0.01 0.35 5.46 -17.82 -0.10 0.25 15 3 Si 1.07 25.01 29.90 -169.99 -5.08 19.93 15 4 H -0.29 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.60 -16.33 8.67 -34.44 -0.30 -16.63 15 8 H 0.05 1.39 7.50 -52.49 -0.39 1.00 15 9 C 0.02 0.45 3.76 -27.88 -0.10 0.35 15 10 C -0.07 -1.28 2.53 -89.04 -0.23 -1.50 15 11 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 12 C -0.12 -1.89 5.74 -25.61 -0.15 -2.04 15 13 C -0.42 -5.64 7.32 37.83 0.28 -5.37 15 14 S 1.18 16.45 14.66 -107.50 -1.58 14.87 15 15 O -0.87 -17.83 18.15 -35.23 -0.64 -18.47 15 16 C -0.39 -6.82 6.25 38.29 0.24 -6.58 15 17 H 0.27 8.21 7.22 -40.82 -0.29 7.91 15 18 H 0.01 0.17 7.97 -51.93 -0.41 -0.25 15 19 H 0.01 0.25 8.01 -51.93 -0.42 -0.17 15 20 H 0.06 1.06 8.10 -51.93 -0.42 0.64 15 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.12 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 24 H 0.12 2.02 7.94 -51.93 -0.41 1.61 15 25 H 0.09 1.82 8.07 -51.93 -0.42 1.40 15 LS Contribution 224.80 15.07 3.39 3.39 Total: -1.00 -35.31 224.80 -6.77 -42.08 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -3.26 Total: -3.00 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -0.36 Total: -31.52 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.76 Total: -27.28 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.64 Total: -18.47 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Atomic # 16 Polarization: 16.45 SS G_CDS: -1.58 Total: 14.87 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -35.31 -6.77 -42.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516387.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.735 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds