Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47101 * 269.99876 * 3 2 1 5 5 H 1.48500 * 109.47065 * 29.99696 * 3 2 1 6 6 H 1.48493 * 109.47243 * 149.99963 * 3 2 1 7 7 C 1.37871 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00524 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47599 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.69928 * 303.14276 * 10 9 7 12 12 S 1.83960 * 110.78320 * 66.45430 * 10 9 7 13 13 C 1.83961 * 94.80546 * 152.76726 * 12 10 9 14 14 C 1.54258 * 102.57856 * 325.50548 * 13 12 10 15 15 C 1.52327 * 112.59153 * 24.53087 * 14 13 12 16 16 H 1.08998 * 108.75890 * 120.73684 * 15 14 13 17 17 O 1.42899 * 108.87005 * 239.18241 * 15 14 13 18 18 H 0.96997 * 119.99764 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.46888 * 59.99769 * 9 7 2 20 20 H 1.09003 * 109.47210 * 300.00735 * 9 7 2 21 21 H 1.08993 * 110.78468 * 83.77961 * 13 12 10 22 22 H 1.08998 * 110.78927 * 207.23374 * 13 12 10 23 23 H 1.08998 * 108.87063 * 263.70855 * 14 13 12 24 24 H 1.09004 * 108.86743 * 145.34604 * 14 13 12 25 25 H 0.96702 * 113.99372 * 303.07151 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 1 2.9187 -3.5931 -0.8529 12 16 3.1929 -3.7111 1.5774 13 6 3.5022 -5.5235 1.5150 14 6 2.2118 -6.0622 0.8637 15 6 1.5049 -5.0154 0.0124 16 1 1.4325 -5.3858 -1.0102 17 8 0.1860 -4.8164 0.5253 18 1 -0.4849 0.8400 -0.0004 19 1 0.6240 -2.5574 -0.8880 20 1 0.6246 -2.5563 0.8919 21 1 4.3706 -5.7465 0.8953 22 1 3.6274 -5.9294 2.5188 23 1 1.5330 -6.3950 1.6488 24 1 2.4643 -6.9160 0.2347 25 1 -0.3464 -5.6227 0.5646 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259523008.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = -60.929006 kcal Electronic energy + Delta-G solvation = -9909.537083 eV Core-core repulsion = 8013.828289 eV Total energy + Delta-G solvation = -1895.708794 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.71391 -33.42368 -32.86870 -30.58875 -26.34754 -24.28025 -21.66080 -19.74491 -17.10226 -16.24674 -15.83384 -14.58630 -14.30305 -14.00509 -13.40323 -12.88397 -12.28973 -12.14883 -11.44820 -11.02803 -10.84665 -10.75209 -10.44654 -10.01852 -9.84971 -9.43263 -9.14839 -8.88597 -8.24849 -6.91440 -5.91796 -3.93560 2.52929 3.12126 3.38098 3.43961 3.49569 4.52736 4.61942 4.85034 5.10278 5.20753 5.44879 5.54567 5.69245 5.83098 5.89778 6.08869 6.32835 6.72919 7.70455 7.91021 8.06102 8.10616 8.46788 9.12758 9.69048 11.19220 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.059900 B = 0.012262 C = 0.010673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.333352 B = 2282.877458 C = 2622.875539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.051 3.949 10 C -0.011 4.011 11 H 0.089 0.911 12 S -0.267 6.267 13 C -0.089 4.089 14 C -0.155 4.155 15 C 0.100 3.900 16 H 0.055 0.945 17 O -0.539 6.539 18 H 0.260 0.740 19 H 0.029 0.971 20 H 0.042 0.958 21 H 0.079 0.921 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -11.738 0.267 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.013 3.987 10 C -0.140 4.140 11 H 0.108 0.892 12 S -0.041 6.041 13 C -0.238 4.238 14 C -0.195 4.195 15 C 0.038 3.962 16 H 0.073 0.927 17 O -0.342 6.342 18 H 0.069 0.931 19 H 0.047 0.953 20 H 0.060 0.940 21 H 0.098 0.902 22 H 0.113 0.887 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.010 -10.135 1.130 10.958 hybrid contribution 0.012 -0.611 -0.887 1.077 sum 4.022 -10.746 0.243 11.477 Atomic orbital electron populations 1.69982 1.05988 1.26471 1.50768 1.24968 0.94798 0.99109 0.95347 0.86608 0.80015 0.83554 0.77985 1.20745 1.21245 1.19784 1.21261 0.93066 0.90897 1.50583 0.92431 1.18838 0.92443 0.88352 0.99040 1.24245 0.98609 0.97321 0.93777 0.89236 1.88352 1.72620 1.07145 1.35935 1.24004 0.99170 0.97151 1.03462 1.22837 0.97370 0.99181 1.00067 1.22431 0.84283 0.94269 0.95181 0.92706 1.86878 1.24180 1.35921 1.87263 0.93077 0.95320 0.93977 0.90224 0.88720 0.90229 0.91382 0.79197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.29 55.43 0.74 -26.92 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 15 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 15 6 H -0.27 -6.84 7.11 56.52 0.40 -6.43 15 7 C -0.52 -15.20 8.64 -34.44 -0.30 -15.49 15 8 H 0.06 1.67 7.71 -52.48 -0.40 1.26 15 9 C 0.05 1.38 3.81 -27.88 -0.11 1.27 15 10 C -0.01 -0.24 3.25 -26.07 -0.08 -0.33 15 11 H 0.09 1.85 8.14 -51.93 -0.42 1.43 15 12 S -0.27 -5.58 22.26 -107.50 -2.39 -7.98 15 13 C -0.09 -1.31 7.46 37.82 0.28 -1.03 15 14 C -0.16 -2.10 6.08 -26.42 -0.16 -2.26 15 15 C 0.10 1.69 3.80 -26.41 -0.10 1.59 15 16 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 17 O -0.54 -9.77 11.40 -35.23 -0.40 -10.17 15 18 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 19 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.04 1.26 7.44 -51.93 -0.39 0.87 15 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.08 1.01 7.78 -51.93 -0.40 0.61 15 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.36 4.44 8.98 45.56 0.41 4.85 15 LS Contribution 225.37 15.07 3.40 3.40 Total: -1.00 -33.01 225.37 -6.70 -39.72 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -2.46 Total: -0.93 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.56 Total: -14.60 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.74 Total: -26.92 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.40 Total: -10.17 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -2.39 Total: -7.98 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -33.01 -6.70 -39.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259523008.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.210 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds