Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47079 * 269.99817 * 3 2 1 5 5 H 1.48494 * 109.47138 * 30.00120 * 3 2 1 6 6 H 1.48504 * 109.47071 * 150.00193 * 3 2 1 7 7 C 1.37882 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99788 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99996 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47383 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.35781 * 55.86647 * 10 9 7 12 12 S 1.83101 * 110.40058 * 293.55146 * 10 9 7 13 13 C 1.83457 * 97.47541 * 238.92095 * 12 10 9 14 14 C 1.55137 * 102.38931 * 336.99576 * 13 12 10 15 15 C 1.54268 * 110.40675 * 178.32116 * 10 9 7 16 16 H 1.09002 * 109.60686 * 27.00420 * 15 10 9 17 17 O 1.42898 * 109.61177 * 266.66653 * 15 10 9 18 18 H 0.96999 * 119.99347 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47304 * 60.00483 * 9 7 2 20 20 H 1.08995 * 109.47618 * 300.00136 * 9 7 2 21 21 H 1.09002 * 110.85718 * 95.27667 * 13 12 10 22 22 H 1.08996 * 110.85746 * 218.71845 * 13 12 10 23 23 H 1.09003 * 109.97607 * 161.58229 * 14 13 12 24 24 H 1.08999 * 109.97229 * 282.85663 * 14 13 12 25 25 H 0.96695 * 114.00425 * 179.97438 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.6069 -3.1855 -0.8455 12 16 3.5884 -3.4666 1.5736 13 6 5.2951 -3.8848 2.1006 14 6 6.0686 -3.8828 0.7558 15 6 5.5634 -2.6620 -0.0429 16 1 5.9568 -1.7486 0.4034 17 8 6.0039 -2.7615 -1.3986 18 1 -0.4849 0.8401 0.0004 19 1 3.8752 -0.6798 0.8895 20 1 3.8745 -0.6809 -0.8904 21 1 5.6896 -3.1259 2.7763 22 1 5.3274 -4.8702 2.5653 23 1 7.1390 -3.7948 0.9419 24 1 5.8604 -4.8002 0.2052 25 1 6.9653 -2.7820 -1.4993 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259523009.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = -62.003060 kcal Electronic energy + Delta-G solvation = -9877.504264 eV Core-core repulsion = 7981.748896 eV Total energy + Delta-G solvation = -1895.755368 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.80733 -33.85104 -32.92836 -30.97058 -26.60908 -24.01275 -21.31262 -20.36412 -17.57763 -16.69008 -15.76571 -14.37852 -14.31494 -14.17508 -13.76825 -12.87249 -12.54073 -12.30826 -11.79743 -11.67733 -11.01433 -10.91484 -10.28027 -10.17376 -9.81918 -9.62691 -9.40001 -9.09547 -8.49304 -6.98945 -5.99997 -3.97485 2.33625 2.94141 3.33238 3.40035 3.42720 4.47545 4.48080 4.77198 4.93556 5.12092 5.34391 5.42338 5.46915 5.74206 5.76437 5.99044 6.28532 6.45951 7.07372 7.26354 7.73041 7.77921 8.54985 9.04469 9.60779 11.13518 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.049296 B = 0.013169 C = 0.011599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.859186 B = 2125.719410 C = 2413.466252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.013 4.013 11 H 0.103 0.897 12 S -0.247 6.247 13 C -0.095 4.095 14 C -0.160 4.160 15 C 0.095 3.905 16 H 0.065 0.935 17 O -0.554 6.554 18 H 0.263 0.737 19 H 0.026 0.974 20 H 0.025 0.975 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.769 -5.160 1.764 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.093 0.907 9 C -0.037 4.037 10 C -0.141 4.141 11 H 0.121 0.879 12 S -0.021 6.021 13 C -0.243 4.243 14 C -0.199 4.199 15 C 0.035 3.965 16 H 0.083 0.917 17 O -0.358 6.358 18 H 0.073 0.927 19 H 0.044 0.956 20 H 0.043 0.957 21 H 0.104 0.896 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 11.899 -5.257 2.187 13.191 hybrid contribution 2.056 1.109 -0.392 2.369 sum 13.955 -4.148 1.796 14.669 Atomic orbital electron populations 1.69911 1.06229 1.26787 1.51056 1.24959 0.94712 0.98937 0.94611 0.86809 0.80370 0.83854 0.78441 1.20297 1.21294 1.19112 1.20976 0.88696 0.94687 1.50617 0.90697 1.19731 0.98096 0.88855 0.96988 1.23718 0.92462 1.02346 0.95616 0.87928 1.88033 1.09887 1.74924 1.29207 1.24080 0.96684 1.04606 0.98976 1.23315 1.00270 1.00636 0.95647 1.23078 0.94855 0.96350 0.82266 0.91673 1.86625 1.26504 1.96997 1.25707 0.92743 0.95618 0.95669 0.89634 0.88581 0.90574 0.89834 0.78238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.37 13.96 55.43 0.77 -27.60 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 15 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 15 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 15 7 C -0.51 -14.94 9.17 -34.44 -0.32 -15.25 15 8 H 0.07 2.39 7.94 -52.49 -0.42 1.97 15 9 C 0.00 0.05 3.45 -27.89 -0.10 -0.05 15 10 C -0.01 -0.27 2.92 -26.07 -0.08 -0.35 15 11 H 0.10 2.29 8.10 -51.93 -0.42 1.87 15 12 S -0.25 -4.96 22.19 -107.50 -2.39 -7.34 15 13 C -0.10 -1.34 7.36 38.29 0.28 -1.06 15 14 C -0.16 -2.06 6.15 -24.87 -0.15 -2.21 15 15 C 0.10 1.54 3.45 -25.34 -0.09 1.45 15 16 H 0.07 1.03 7.86 -51.93 -0.41 0.62 15 17 O -0.55 -8.45 13.32 -35.23 -0.47 -8.92 15 18 H 0.26 7.73 8.31 -40.82 -0.34 7.39 15 19 H 0.03 0.63 7.20 -51.93 -0.37 0.26 15 20 H 0.03 0.62 7.57 -51.93 -0.39 0.23 15 21 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.37 3.57 9.09 45.56 0.41 3.98 15 LS Contribution 224.30 15.07 3.38 3.38 Total: -1.00 -32.69 224.30 -6.37 -39.06 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -2.46 Total: -0.46 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.54 Total: -15.51 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.77 Total: -27.60 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.47 Total: -8.92 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.39 Total: -7.34 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -32.69 -6.37 -39.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259523009.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.947 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds