Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47079 * 269.99817 * 3 2 1 5 5 H 1.48494 * 109.47138 * 30.00120 * 3 2 1 6 6 H 1.48504 * 109.47071 * 150.00193 * 3 2 1 7 7 C 1.37882 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99788 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99996 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47383 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.35781 * 55.86647 * 10 9 7 12 12 S 1.83101 * 110.40058 * 293.55146 * 10 9 7 13 13 C 1.83457 * 97.47541 * 238.92095 * 12 10 9 14 14 C 1.55137 * 102.38931 * 336.99576 * 13 12 10 15 15 C 1.54268 * 110.40675 * 178.32116 * 10 9 7 16 16 H 1.09002 * 109.60686 * 27.00420 * 15 10 9 17 17 O 1.42898 * 109.61177 * 266.66653 * 15 10 9 18 18 H 0.96999 * 119.99347 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47304 * 60.00483 * 9 7 2 20 20 H 1.08995 * 109.47618 * 300.00136 * 9 7 2 21 21 H 1.09002 * 110.85718 * 95.27667 * 13 12 10 22 22 H 1.08996 * 110.85746 * 218.71845 * 13 12 10 23 23 H 1.09003 * 109.97607 * 161.58229 * 14 13 12 24 24 H 1.08999 * 109.97229 * 282.85663 * 14 13 12 25 25 H 0.96695 * 114.00425 * 179.97438 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.6069 -3.1855 -0.8455 12 16 3.5884 -3.4666 1.5736 13 6 5.2951 -3.8848 2.1006 14 6 6.0686 -3.8828 0.7558 15 6 5.5634 -2.6620 -0.0429 16 1 5.9568 -1.7486 0.4034 17 8 6.0039 -2.7615 -1.3986 18 1 -0.4849 0.8401 0.0004 19 1 3.8752 -0.6798 0.8895 20 1 3.8745 -0.6809 -0.8904 21 1 5.6896 -3.1259 2.7763 22 1 5.3274 -4.8702 2.5653 23 1 7.1390 -3.7948 0.9419 24 1 5.8604 -4.8002 0.2052 25 1 6.9653 -2.7820 -1.4993 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259523009.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = -86.995495 kcal Electronic energy + Delta-G solvation = -9878.588018 eV Core-core repulsion = 7981.748896 eV Total energy + Delta-G solvation = -1896.839122 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.04591 -35.62223 -34.45209 -32.83296 -28.34191 -25.46511 -23.01668 -21.82629 -18.99235 -18.69764 -17.26288 -16.27505 -15.67254 -15.53378 -15.05730 -14.67859 -14.40884 -13.63036 -13.52709 -12.91866 -12.86900 -12.30798 -11.99656 -11.82738 -11.66137 -11.43241 -10.96474 -10.82623 -10.61543 -8.59545 -8.28506 -6.32392 0.91277 1.34233 1.37297 1.48396 1.58376 2.35832 3.06715 3.31671 3.61573 3.77276 4.00339 4.18115 4.32350 4.60474 4.64480 4.73479 4.84328 5.05283 5.10753 5.33190 5.59051 6.24715 6.71945 6.89744 7.29784 8.88943 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.049296 B = 0.013169 C = 0.011599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.859186 B = 2125.719410 C = 2413.466252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.520 4.520 8 H 0.026 0.974 9 C 0.009 3.991 10 C -0.011 4.011 11 H 0.073 0.927 12 S -0.335 6.335 13 C -0.069 4.069 14 C -0.146 4.146 15 C 0.102 3.898 16 H 0.076 0.924 17 O -0.571 6.571 18 H 0.266 0.734 19 H 0.030 0.970 20 H 0.028 0.972 21 H 0.104 0.896 22 H 0.122 0.878 23 H 0.125 0.875 24 H 0.082 0.918 25 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.324 -4.655 2.273 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.167 1.167 7 C -0.558 4.558 8 H 0.045 0.955 9 C -0.030 4.030 10 C -0.140 4.140 11 H 0.092 0.908 12 S -0.110 6.110 13 C -0.217 4.217 14 C -0.185 4.185 15 C 0.041 3.959 16 H 0.094 0.906 17 O -0.380 6.380 18 H 0.075 0.925 19 H 0.049 0.951 20 H 0.046 0.954 21 H 0.122 0.878 22 H 0.140 0.860 23 H 0.143 0.857 24 H 0.101 0.899 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 15.493 -4.774 2.691 16.434 hybrid contribution 0.935 0.831 -0.547 1.365 sum 16.428 -3.943 2.144 17.030 Atomic orbital electron populations 1.70081 1.08386 1.28116 1.52735 1.26019 0.95669 1.03561 0.94122 0.85623 0.79558 0.78012 0.79243 1.19051 1.20801 1.16744 1.21249 0.91440 0.92984 1.50137 0.95546 1.19588 0.94710 0.91684 0.96976 1.23489 0.96556 0.99351 0.94621 0.90846 1.88241 1.17318 1.75519 1.29896 1.24272 0.90888 1.06389 1.00110 1.23251 1.02530 0.98805 0.93888 1.22886 0.90973 0.98628 0.83370 0.90601 1.86564 1.29254 1.97097 1.25102 0.92511 0.95148 0.95354 0.87789 0.86019 0.85699 0.89928 0.75072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.16 13.96 21.45 0.30 -61.86 15 2 C 0.00 0.16 5.47 84.66 0.46 0.62 15 3 Si 0.95 45.44 27.47 68.60 1.88 47.32 15 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.24 -10.66 6.54 99.48 0.65 -10.01 15 7 C -0.52 -31.53 9.17 25.60 0.23 -31.30 15 8 H 0.03 1.80 7.94 -2.91 -0.02 1.78 15 9 C 0.01 0.44 3.45 29.85 0.10 0.55 15 10 C -0.01 -0.48 2.92 31.02 0.09 -0.39 15 11 H 0.07 3.42 8.10 -2.39 -0.02 3.40 15 12 S -0.34 -13.54 22.19 -56.49 -1.25 -14.80 15 13 C -0.07 -1.68 7.36 72.71 0.54 -1.15 15 14 C -0.15 -3.08 6.15 31.80 0.20 -2.89 15 15 C 0.10 2.99 3.45 31.50 0.11 3.10 15 16 H 0.08 2.08 7.86 -2.39 -0.02 2.06 15 17 O -0.57 -15.66 13.32 -148.98 -1.98 -17.65 15 18 H 0.27 16.11 8.31 -92.71 -0.77 15.34 15 19 H 0.03 1.45 7.20 -2.38 -0.02 1.43 15 20 H 0.03 1.36 7.57 -2.39 -0.02 1.34 15 21 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 22 H 0.12 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.12 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.40 5.92 9.09 -74.06 -0.67 5.24 15 Total: -1.00 -74.90 224.30 1.12 -73.77 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.45 Total: 4.67 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 1.73 Total: -31.46 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.30 Total: -61.86 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -1.98 Total: -17.65 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Atomic # 16 Polarization: -13.54 SS G_CDS: -1.25 Total: -14.80 kcal Total: -74.90 1.12 -73.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259523009.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.221 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds