Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86795 * 120.00206 * 2 1 4 4 H 1.48494 * 109.47149 * 90.00297 * 3 2 1 5 5 H 1.48502 * 109.47179 * 210.00642 * 3 2 1 6 6 H 1.48502 * 109.47254 * 330.00261 * 3 2 1 7 7 C 1.40041 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99704 * 17.45877 * 7 2 1 9 9 C 1.40647 * 120.00515 * 197.46866 * 7 2 1 10 10 C 1.40936 * 121.22840 * 27.92218 * 9 7 2 11 11 N 1.31518 * 120.59742 * 179.97438 * 10 9 7 12 12 C 1.31965 * 123.53714 * 0.02562 * 11 10 9 13 13 C 1.38784 * 121.63791 * 0.02562 * 12 11 10 14 14 N 1.37730 * 134.37739 * 179.97438 * 13 12 11 15 15 H 0.96999 * 125.56369 * 0.02562 * 14 13 12 16 16 C 1.36467 * 108.87705 * 180.02562 * 14 13 12 17 17 C 1.35059 * 109.55766 * 359.97438 * 16 14 13 18 18 C 1.40618 * 107.76496 * 359.76294 * 17 16 14 19 19 H 0.96995 * 120.00328 * 175.46094 * 1 2 3 20 20 H 1.08002 * 119.70388 * 359.96265 * 10 9 7 21 21 H 1.08002 * 119.17781 * 180.02562 * 12 11 10 22 22 H 1.08008 * 125.21976 * 180.02562 * 16 14 13 23 23 H 1.08000 * 126.11613 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0463 1.4000 5 1 3.5397 1.4401 -0.7002 6 1 1.4396 2.6527 -0.7000 7 6 2.0083 -1.2128 -0.0005 8 1 1.5055 -2.1265 -0.2816 9 6 3.3661 -1.2412 0.3651 10 6 3.9037 -0.2884 1.2536 11 7 5.1752 -0.3268 1.5874 12 6 6.0217 -1.2308 1.1316 13 6 5.6205 -2.2242 0.2493 14 7 6.2592 -3.2714 -0.3772 15 1 7.1978 -3.4974 -0.2830 16 6 5.3560 -3.9393 -1.1522 17 6 4.1450 -3.3512 -1.0438 18 6 4.2731 -2.2651 -0.1598 19 1 -0.4850 -0.8373 -0.0665 20 1 3.2658 0.4805 1.6639 21 1 7.0521 -1.1967 1.4531 22 1 5.5758 -4.8057 -1.7585 23 1 3.2395 -3.6619 -1.5436 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259610191.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = 30.717551 kcal Electronic energy + Delta-G solvation = -10858.566618 eV Core-core repulsion = 8863.680717 eV Total energy + Delta-G solvation = -1994.885901 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.00149 -38.51428 -36.00314 -33.11973 -30.80095 -30.37505 -26.86284 -23.48052 -23.10690 -21.40193 -20.42024 -18.71640 -17.52009 -16.50498 -16.05822 -15.42594 -15.18018 -14.76677 -14.34458 -14.01546 -13.37204 -13.06811 -12.76932 -12.40221 -12.07997 -11.63182 -11.19583 -10.51590 -10.07288 -9.54604 -9.24803 -8.81523 -6.57606 0.41716 0.93544 1.36673 1.47600 1.74808 2.04684 2.10626 2.42526 2.60152 3.51750 4.10128 4.20956 4.33991 4.48685 4.63815 4.86670 5.09810 5.14306 5.31945 5.48660 5.76053 5.91208 6.02949 6.14599 6.47615 6.62213 6.94385 7.69636 7.83452 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.049027 B = 0.015760 C = 0.012764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.978121 B = 1776.207517 C = 2193.199471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.019 3.981 3 Si 1.108 2.892 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.073 3.927 10 C -0.134 4.134 11 N -0.448 5.448 12 C -0.032 4.032 13 C 0.053 3.947 14 N -0.558 5.558 15 H 0.432 0.568 16 C 0.037 3.963 17 C -0.217 4.217 18 C -0.189 4.189 19 H 0.286 0.714 20 H 0.130 0.870 21 H 0.157 0.843 22 H 0.217 0.783 23 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.087 -4.798 -2.868 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.199 4.199 3 Si 0.930 3.070 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.067 3.933 10 C -0.287 4.287 11 N -0.155 5.155 12 C -0.200 4.200 13 C -0.059 4.059 14 N -0.161 5.161 15 H 0.273 0.727 16 C -0.092 4.092 17 C -0.242 4.242 18 C -0.199 4.199 19 H 0.097 0.903 20 H 0.147 0.853 21 H 0.175 0.825 22 H 0.233 0.767 23 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.109 -2.622 -2.255 9.743 hybrid contribution -0.450 -2.601 -0.529 2.692 sum 8.659 -5.222 -2.784 10.488 Atomic orbital electron populations 1.70571 1.08255 1.33161 1.31707 1.28274 0.95758 1.06467 0.89380 0.83117 0.74015 0.70861 0.79026 1.18541 1.20281 1.19593 1.20521 0.95429 0.96636 1.40565 0.92143 1.19395 0.92894 0.91165 0.89810 1.22084 0.92544 1.06512 1.07598 1.66482 1.04401 1.22362 1.22247 1.21150 0.99619 0.95391 1.03881 1.19273 0.92758 0.93808 1.00096 1.41585 1.11792 1.24015 1.38718 0.72719 1.22366 0.87803 1.00108 0.98966 1.20582 0.99105 0.99174 1.05303 1.19851 0.93470 1.01926 1.04638 0.90310 0.85278 0.82543 0.76657 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.07 13.65 21.85 0.30 -43.77 14 2 C 0.02 1.01 5.44 85.28 0.46 1.48 14 3 Si 1.11 51.20 24.90 68.60 1.71 52.91 14 4 H -0.26 -11.44 6.44 99.48 0.64 -10.80 14 5 H -0.28 -13.33 7.00 99.48 0.70 -12.63 14 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 14 7 C -0.50 -28.37 9.48 23.30 0.22 -28.15 14 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 14 9 C 0.07 3.99 5.32 -19.87 -0.11 3.89 14 10 C -0.13 -7.17 8.52 85.40 0.73 -6.44 14 11 N -0.45 -22.49 10.23 -193.34 -1.98 -24.46 14 12 C -0.03 -1.40 11.18 84.80 0.95 -0.45 14 13 C 0.05 2.23 7.32 39.00 0.29 2.52 14 14 N -0.56 -16.83 6.13 -187.35 -1.15 -17.98 14 15 H 0.43 8.79 8.96 -92.71 -0.83 7.96 14 16 C 0.04 1.10 11.86 83.24 0.99 2.09 14 17 C -0.22 -8.83 10.79 22.12 0.24 -8.59 14 18 C -0.19 -9.28 6.26 -19.89 -0.12 -9.41 14 19 H 0.29 15.09 8.73 -92.71 -0.81 14.28 14 20 H 0.13 6.84 4.32 -2.91 -0.01 6.82 14 21 H 0.16 5.46 8.06 -2.91 -0.02 5.43 14 22 H 0.22 3.80 8.06 -2.91 -0.02 3.78 14 23 H 0.13 5.11 8.06 -2.91 -0.02 5.08 14 Total: -1.00 -66.52 205.87 2.82 -63.71 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.30 Total: 12.66 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 3.64 Total: -43.07 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.83 Total: -86.21 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.71 Total: 52.91 kcal Total: -66.52 2.82 -63.71 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259610191.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.423 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds