Wall clock time and date at job start Mon Mar 30 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86811 * 119.99830 * 2 1 4 4 H 1.48495 * 109.46931 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47089 * 239.99880 * 3 2 1 6 6 H 1.48499 * 109.46772 * 119.99779 * 3 2 1 7 7 C 1.37880 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99625 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.60222 * 325.62455 * 9 7 2 11 11 C 1.55160 * 109.59893 * 205.30447 * 9 7 2 12 12 S 1.83996 * 100.90536 * 198.63113 * 11 9 7 13 13 O 1.42103 * 109.46661 * 148.40560 * 12 11 9 14 14 C 1.83398 * 95.85134 * 35.35092 * 12 11 9 15 15 C 1.52933 * 109.60574 * 85.76772 * 9 7 2 16 16 H 1.08999 * 108.89037 * 270.82318 * 15 9 7 17 17 N 1.46906 * 108.88594 * 29.23491 * 15 9 7 18 18 H 0.97001 * 120.00053 * 179.97438 * 1 2 3 19 19 H 1.08991 * 111.13050 * 316.54011 * 11 9 7 20 20 H 1.08997 * 111.13363 * 80.72392 * 11 9 7 21 21 H 1.08996 * 110.34146 * 99.12122 * 14 12 11 22 22 H 1.08998 * 110.33823 * 221.27356 * 14 12 11 23 23 H 1.00906 * 111.00071 * 173.32828 * 17 15 9 24 24 H 1.00897 * 110.99823 * 297.27477 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.3341 -2.3924 0.5777 11 6 2.1350 -3.6110 0.6227 12 16 1.2912 -5.1205 -0.0058 13 8 2.2479 -6.1542 -0.1938 14 6 0.8286 -4.4123 -1.6331 15 6 0.9030 -2.8894 -1.4388 16 1 -0.0613 -2.4530 -1.6993 17 7 1.9265 -2.3444 -2.3408 18 1 -0.4850 -0.8400 -0.0004 19 1 3.1593 -3.5515 0.2549 20 1 2.1073 -3.5699 1.7115 21 1 1.5347 -4.7314 -2.3996 22 1 -0.1839 -4.7125 -1.9029 23 1 1.7888 -2.6733 -3.2847 24 1 1.9380 -1.3361 -2.3073 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259633282.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:14 Heat of formation + Delta-G solvation = -44.207216 kcal Electronic energy + Delta-G solvation = -10268.046211 eV Core-core repulsion = 8307.636617 eV Total energy + Delta-G solvation = -1960.409594 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 189.056 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.77399 -34.99534 -32.50445 -30.17625 -27.94693 -24.74330 -22.88070 -19.28749 -17.00384 -16.65089 -15.53564 -14.72183 -14.43081 -13.81282 -13.46671 -13.16814 -12.87044 -11.93034 -11.67468 -11.19232 -10.98693 -10.84080 -10.44946 -10.18825 -9.89399 -9.30766 -8.66492 -8.48539 -7.81801 -7.53274 -6.45018 -4.13654 2.43058 2.99991 3.39305 3.40349 3.58952 4.37222 4.45562 5.22371 5.39495 5.59082 5.90216 5.99808 6.04607 6.18831 6.54297 6.59783 7.03655 7.16821 7.95087 8.26297 8.39318 8.51498 8.79954 9.51466 10.92616 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.070040 B = 0.012707 C = 0.012211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.676435 B = 2203.031189 C = 2292.470743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.066 2.934 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.562 4.562 8 H 0.054 0.946 9 C 0.041 3.959 10 H 0.050 0.950 11 C -0.371 4.371 12 S 1.164 4.836 13 O -0.884 6.884 14 C -0.415 4.415 15 C 0.106 3.894 16 H 0.028 0.972 17 N -0.832 5.832 18 H 0.268 0.732 19 H 0.085 0.915 20 H 0.102 0.898 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.308 0.692 24 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -4.257 -0.274 4.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.894 3.106 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.602 4.602 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.068 0.932 11 C -0.511 4.511 12 S 1.367 4.633 13 O -0.879 6.879 14 C -0.554 4.554 15 C -0.007 4.007 16 H 0.046 0.954 17 N -0.364 5.364 18 H 0.080 0.920 19 H 0.104 0.896 20 H 0.120 0.880 21 H 0.108 0.892 22 H 0.122 0.878 23 H 0.119 0.881 24 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.292 -4.021 0.618 4.670 hybrid contribution 1.125 -0.493 -1.879 2.245 sum -1.167 -4.514 -1.262 4.830 Atomic orbital electron populations 1.70858 1.06759 1.30534 1.46874 1.25857 0.96526 1.02582 0.93951 0.83559 0.74881 0.75378 0.76732 1.20950 1.21423 1.21434 1.21721 0.94452 0.90169 1.53811 0.92780 1.19364 0.95162 0.94174 0.89232 0.93223 1.27940 1.07511 1.09940 1.05753 1.70234 1.11406 0.84667 0.97009 1.93028 1.65195 1.46006 1.83706 1.27936 1.06470 1.04598 1.16358 1.21618 0.92895 0.88449 0.97696 0.95412 1.58948 1.52296 1.16253 1.08931 0.92010 0.89587 0.87959 0.89162 0.87836 0.88144 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.09 13.63 55.43 0.76 -24.34 14 2 C 0.01 0.38 5.33 -17.82 -0.09 0.29 14 3 Si 1.07 23.82 29.90 -169.99 -5.08 18.73 14 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 14 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 14 6 H -0.29 -6.28 7.11 56.52 0.40 -5.88 14 7 C -0.56 -14.44 6.28 -34.44 -0.22 -14.65 14 8 H 0.05 1.46 7.79 -52.49 -0.41 1.06 14 9 C 0.04 0.92 2.09 -90.66 -0.19 0.73 14 10 H 0.05 1.12 6.74 -51.93 -0.35 0.77 14 11 C -0.37 -7.51 6.84 38.30 0.26 -7.25 14 12 S 1.16 19.81 14.63 -107.50 -1.57 18.24 14 13 O -0.88 -20.23 18.15 -35.23 -0.64 -20.87 14 14 C -0.41 -7.25 7.04 37.52 0.26 -6.99 14 15 C 0.11 2.18 3.57 -67.38 -0.24 1.94 14 16 H 0.03 0.59 8.07 -51.93 -0.42 0.17 14 17 N -0.83 -17.56 8.58 -4.38 -0.04 -17.60 14 18 H 0.27 7.19 6.59 -40.82 -0.27 6.92 14 19 H 0.09 1.97 8.08 -51.93 -0.42 1.55 14 20 H 0.10 1.87 8.14 -51.93 -0.42 1.45 14 21 H 0.09 1.70 7.75 -51.93 -0.40 1.30 14 22 H 0.10 1.46 8.14 -51.93 -0.42 1.04 14 23 H 0.31 5.68 8.77 -39.29 -0.34 5.34 14 24 H 0.36 8.05 7.46 -39.29 -0.29 7.75 14 LS Contribution 214.91 15.07 3.24 3.24 Total: -1.00 -32.78 214.91 -6.10 -38.88 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -2.55 Total: 9.63 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -0.22 Total: -25.92 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.72 Total: -41.93 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.64 Total: -20.87 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.08 Total: 18.73 kcal Atomic # 16 Polarization: 19.81 SS G_CDS: -1.57 Total: 18.24 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -32.78 -6.10 -38.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259633282.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.326 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds