Wall clock time and date at job start Mon Mar 30 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86796 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47628 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47429 * 300.00551 * 3 2 1 6 6 H 1.48506 * 109.47014 * 59.99986 * 3 2 1 7 7 C 1.39972 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 163.12454 * 7 2 1 9 9 C 1.40519 * 120.00176 * 343.39290 * 7 2 1 10 10 C 1.46882 * 120.74721 * 335.82008 * 9 7 2 11 11 C 1.34170 * 119.47625 * 179.73168 * 10 9 7 12 12 N 1.37029 * 121.10231 * 0.57075 * 11 10 9 13 13 C 1.36108 * 132.63256 * 179.70644 * 12 11 10 14 14 N 1.31188 * 107.63613 * 179.97438 * 13 12 11 15 15 N 1.28618 * 110.30090 * 359.97438 * 14 13 12 16 16 C 1.33005 * 109.38405 * 0.02562 * 15 14 13 17 17 C 1.39688 * 132.66993 * 179.97438 * 16 15 14 18 18 H 0.96999 * 119.99636 * 359.97438 * 1 2 3 19 19 H 1.07998 * 120.25669 * 0.02562 * 10 9 7 20 20 H 1.07999 * 119.44383 * 180.23109 * 11 10 9 21 21 H 1.08001 * 126.18269 * 359.94271 * 13 12 11 22 22 H 1.08000 * 120.55535 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2122 -0.0005 8 1 3.0531 -1.2323 -0.2721 9 6 1.3493 -2.4039 0.3467 10 6 0.1488 -2.3794 1.1927 11 6 -0.4630 -3.5321 1.5041 12 7 0.0200 -4.7335 1.0558 13 6 -0.3984 -6.0173 1.2275 14 7 0.4318 -6.7964 0.5759 15 7 1.3458 -6.0953 0.0036 16 6 1.1429 -4.8072 0.2656 17 6 1.8276 -3.6468 -0.1031 18 1 -0.4849 0.8401 0.0004 19 1 -0.2410 -1.4404 1.5571 20 1 -1.3479 -3.5131 2.1231 21 1 -1.2583 -6.3368 1.7976 22 1 2.7096 -3.7035 -0.7239 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259762276.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:41 Heat of formation + Delta-G solvation = 72.084292 kcal Electronic energy + Delta-G solvation = -10842.197908 eV Core-core repulsion = 8783.679892 eV Total energy + Delta-G solvation = -2058.518016 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.65169 -38.47763 -36.01581 -33.79849 -31.50712 -30.41370 -27.67782 -24.15739 -23.46796 -22.81540 -19.61275 -18.64327 -17.22524 -17.06401 -16.82852 -15.90177 -15.26561 -14.97557 -13.91817 -13.37312 -13.12777 -12.99727 -12.86537 -12.45360 -12.14128 -11.73883 -11.67241 -11.09064 -11.01752 -10.03824 -9.08304 -8.75668 -6.65065 0.35362 0.71814 1.42123 1.47667 1.58751 1.98771 2.13646 2.16021 2.40250 3.29735 3.75421 3.98959 4.34209 4.37413 4.50556 4.79942 4.99753 5.23605 5.42425 5.59511 5.69083 5.85711 6.17367 6.43325 6.57117 6.68976 7.99608 8.02846 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.090778 B = 0.010637 C = 0.009738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.370797 B = 2631.621824 C = 2874.558692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.044 3.956 3 Si 0.995 3.005 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.438 4.438 8 H 0.091 0.909 9 C 0.113 3.887 10 C -0.123 4.123 11 C 0.037 3.963 12 N -0.431 5.431 13 C 0.080 3.920 14 N -0.310 5.310 15 N -0.427 5.427 16 C 0.247 3.753 17 C -0.347 4.347 18 H 0.307 0.693 19 H 0.163 0.837 20 H 0.197 0.803 21 H 0.258 0.742 22 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 6.428 4.736 8.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.178 4.178 3 Si 0.814 3.186 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.466 4.466 8 H 0.109 0.891 9 C 0.105 3.895 10 C -0.145 4.145 11 C -0.081 4.081 12 N -0.115 5.115 13 C -0.204 4.204 14 N -0.146 5.146 15 N -0.274 5.274 16 C 0.004 3.996 17 C -0.375 4.375 18 H 0.118 0.882 19 H 0.180 0.820 20 H 0.214 0.786 21 H 0.273 0.727 22 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.312 5.052 4.176 7.344 hybrid contribution -0.194 1.476 0.208 1.503 sum -3.506 6.528 4.384 8.610 Atomic orbital electron populations 1.69712 1.09042 1.32668 1.29533 1.26969 0.95693 1.04885 0.90234 0.84939 0.79281 0.74789 0.79625 1.18298 1.18775 1.17685 1.19949 0.98675 0.91313 1.36672 0.89085 1.18950 0.90283 0.92319 0.87953 1.22522 0.96433 0.97326 0.98180 1.21845 1.01782 0.81896 1.02567 1.43756 1.22118 1.07754 1.37920 1.26782 1.05835 0.78504 1.09304 1.73780 1.02475 1.28695 1.09691 1.74932 1.23290 0.99302 1.29904 1.22221 0.88497 0.95329 0.93529 1.19710 1.09610 0.88516 1.19622 0.88160 0.81998 0.78627 0.72677 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -32.41 10.88 21.83 0.24 -32.17 14 2 C 0.04 1.79 5.21 85.26 0.44 2.24 14 3 Si 0.99 30.78 29.59 68.60 2.03 32.81 14 4 H -0.26 -8.21 7.11 99.48 0.71 -7.50 14 5 H -0.26 -7.92 7.11 99.48 0.71 -7.21 14 6 H -0.25 -7.27 7.11 99.48 0.71 -6.57 14 7 C -0.44 -20.49 9.05 23.25 0.21 -20.28 14 8 H 0.09 4.19 7.90 -2.91 -0.02 4.17 14 9 C 0.11 5.58 5.72 -19.89 -0.11 5.46 14 10 C -0.12 -5.23 8.81 23.61 0.21 -5.02 14 11 C 0.04 1.42 10.92 82.95 0.91 2.33 14 12 N -0.43 -19.14 2.96 -356.48 -1.06 -20.19 14 13 C 0.08 3.22 12.94 179.72 2.33 5.54 14 14 N -0.31 -15.19 12.20 -59.24 -0.72 -15.91 14 15 N -0.43 -23.51 12.34 -55.66 -0.69 -24.20 14 16 C 0.25 13.10 7.86 133.52 1.05 14.15 14 17 C -0.35 -18.42 9.94 23.19 0.23 -18.19 14 18 H 0.31 10.91 8.30 -92.71 -0.77 10.14 14 19 H 0.16 6.47 6.28 -2.91 -0.02 6.45 14 20 H 0.20 5.21 8.06 -2.91 -0.02 5.19 14 21 H 0.26 6.82 8.06 -2.91 -0.02 6.80 14 22 H 0.11 5.68 8.06 -2.91 -0.02 5.65 14 Total: -1.00 -62.61 206.39 6.30 -56.31 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 1.24 Total: 17.12 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.26 Total: -13.77 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -2.23 Total: -92.47 kcal Atomic # 14 Polarization: 30.78 SS G_CDS: 2.03 Total: 32.81 kcal Total: -62.61 6.30 -56.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762276.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.390 kcal (2) G-P(sol) polarization free energy of solvation -62.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds