Wall clock time and date at job start Mon Mar 30 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86801 * 120.00543 * 2 1 4 4 H 1.48496 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46942 * 300.00109 * 3 2 1 6 6 H 1.48491 * 109.47083 * 60.00069 * 3 2 1 7 7 C 1.40125 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.40936 * 119.99841 * 359.97438 * 7 2 1 10 10 N 1.33780 * 120.04896 * 0.02562 * 9 7 2 11 11 C 1.31627 * 122.08134 * 179.97438 * 10 9 7 12 12 C 1.38408 * 121.62020 * 359.97386 * 11 10 9 13 13 C 1.40045 * 119.15806 * 0.05921 * 12 11 10 14 14 N 1.35348 * 134.70446 * 179.97438 * 13 12 11 15 15 C 1.30292 * 109.45637 * 179.97438 * 14 13 12 16 16 N 1.36046 * 110.02964 * 0.24390 * 15 14 13 17 17 H 0.97001 * 126.28079 * 179.71988 * 16 15 14 18 18 C 1.37088 * 107.43074 * 359.60551 * 16 15 14 19 19 H 0.97008 * 119.99360 * 359.97438 * 1 2 3 20 20 H 1.08006 * 119.18376 * 180.02562 * 11 10 9 21 21 H 1.08008 * 120.42273 * 180.02562 * 12 11 10 22 22 H 1.08002 * 124.98245 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3462 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8827 2.3963 1.2124 7 6 2.0077 -1.2136 -0.0005 8 1 3.0877 -1.2137 -0.0010 9 6 1.3029 -2.4340 -0.0005 10 7 -0.0349 -2.4350 -0.0005 11 6 -0.7332 -3.5508 -0.0010 12 6 -0.1190 -4.7912 -0.0021 13 6 1.2797 -4.8600 -0.0015 14 7 2.1834 -5.8676 -0.0017 15 6 3.3878 -5.3705 -0.0013 16 7 3.3307 -4.0112 0.0047 17 1 4.0879 -3.4050 0.0101 18 6 2.0068 -3.6557 -0.0009 19 1 -0.4849 0.8402 0.0004 20 1 -1.8119 -3.4971 -0.0014 21 1 -0.7110 -5.6946 -0.0029 22 1 4.2978 -5.9521 -0.0009 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770041.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:29 Heat of formation + Delta-G solvation = 52.436991 kcal Electronic energy + Delta-G solvation = -10946.478531 eV Core-core repulsion = 8887.108544 eV Total energy + Delta-G solvation = -2059.369986 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.62255 -38.58842 -35.58400 -33.67467 -31.14407 -30.66841 -27.60820 -23.91426 -23.30149 -22.10931 -19.36256 -18.93928 -17.51637 -16.71448 -16.04216 -15.89686 -15.21402 -14.74343 -14.02326 -13.48944 -13.34685 -13.02046 -12.78631 -12.37629 -11.88646 -11.58065 -10.99366 -10.83892 -9.64340 -9.41923 -9.11144 -8.36319 -6.51911 0.56843 1.08581 1.41746 1.49106 1.57248 2.19545 2.24981 2.44148 2.88041 3.70984 3.86468 4.21773 4.34938 4.73195 4.84384 4.99946 5.12664 5.19754 5.49726 5.81428 6.05778 6.23153 6.57367 6.74405 6.89038 7.23119 8.18404 8.39417 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.052741 B = 0.013968 C = 0.011086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.771667 B = 2004.145235 C = 2525.074460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.021 3.979 3 Si 0.993 3.007 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.448 4.448 8 H 0.097 0.903 9 C 0.255 3.745 10 N -0.535 5.535 11 C 0.111 3.889 12 C -0.302 4.302 13 C 0.071 3.929 14 N -0.553 5.553 15 C 0.246 3.754 16 N -0.565 5.565 17 H 0.431 0.569 18 C -0.100 4.100 19 H 0.283 0.717 20 H 0.145 0.855 21 H 0.111 0.889 22 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 0.157 0.012 7.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.202 4.202 3 Si 0.812 3.188 4 H -0.171 1.171 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.480 4.480 8 H 0.115 0.885 9 C 0.124 3.876 10 N -0.252 5.252 11 C -0.047 4.047 12 C -0.329 4.329 13 C -0.053 4.053 14 N -0.277 5.277 15 C -0.040 4.040 16 N -0.176 5.176 17 H 0.271 0.729 18 C -0.213 4.213 19 H 0.094 0.906 20 H 0.162 0.838 21 H 0.130 0.870 22 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 6.632 0.192 0.013 6.635 hybrid contribution 0.818 0.674 0.002 1.060 sum 7.450 0.866 0.016 7.500 Atomic orbital electron populations 1.70236 1.09173 1.29531 1.27422 1.27070 0.95751 1.04700 0.92704 0.84997 0.79482 0.75512 0.78767 1.17124 1.19224 1.19211 1.19957 0.94915 0.90096 1.42997 0.88532 1.18332 0.88595 0.89883 0.90776 1.68855 1.05464 1.27244 1.23665 1.22617 0.99786 0.88007 0.94292 1.20610 0.90982 0.98292 1.23031 1.19241 0.94699 0.88952 1.02388 1.70226 0.99708 1.31795 1.25956 1.26248 0.98778 0.80769 0.98202 1.42651 1.06064 1.08609 1.60242 0.72916 1.20318 0.85758 0.97822 1.17427 0.90629 0.83785 0.87045 0.71942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.05 11.47 21.86 0.25 -38.80 14 2 C 0.02 1.03 5.50 85.32 0.47 1.50 14 3 Si 0.99 35.55 29.56 68.60 2.03 37.58 14 4 H -0.25 -8.25 7.11 99.48 0.71 -7.54 14 5 H -0.27 -9.33 7.11 99.48 0.71 -8.63 14 6 H -0.27 -9.33 7.11 99.48 0.71 -8.62 14 7 C -0.45 -22.92 9.14 23.39 0.21 -22.71 14 8 H 0.10 4.36 7.85 -2.91 -0.02 4.34 14 9 C 0.26 14.10 6.56 40.18 0.26 14.37 14 10 N -0.54 -30.70 7.86 -189.23 -1.49 -32.18 14 11 C 0.11 5.75 11.14 84.76 0.94 6.69 14 12 C -0.30 -15.37 10.18 22.75 0.23 -15.13 14 13 C 0.07 3.63 7.30 39.64 0.29 3.92 14 14 N -0.55 -24.50 11.28 -191.83 -2.16 -26.67 14 15 C 0.25 8.21 12.97 180.00 2.34 10.55 14 16 N -0.56 -20.95 6.18 -189.89 -1.17 -22.12 14 17 H 0.43 12.58 8.96 -92.71 -0.83 11.75 14 18 C -0.10 -5.00 7.07 39.59 0.28 -4.72 14 19 H 0.28 13.30 8.29 -92.70 -0.77 12.53 14 20 H 0.14 6.55 8.06 -2.91 -0.02 6.53 14 21 H 0.11 5.17 8.06 -2.91 -0.02 5.15 14 22 H 0.27 4.90 8.06 -2.91 -0.02 4.88 14 Total: -1.00 -70.26 206.80 2.91 -67.35 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.43 Total: 20.38 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.03 Total: -5.54 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -4.57 Total: -119.78 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Total: -70.26 2.91 -67.35 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770041.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.788 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds