Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86805 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46942 * 239.99939 * 3 2 1 5 5 H 1.48496 * 109.46937 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46881 * 120.00171 * 3 2 1 7 7 C 1.40173 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.40636 * 119.99996 * 0.02562 * 7 2 1 10 10 N 1.33932 * 120.44191 * 359.97438 * 9 7 2 11 11 C 1.31400 * 121.93471 * 179.97438 * 10 9 7 12 12 C 1.38648 * 122.27735 * 359.97438 * 11 10 9 13 13 C 1.38735 * 119.85182 * 0.02562 * 12 11 10 14 14 O 1.34726 * 135.26003 * 179.68292 * 13 12 11 15 15 C 1.34282 * 107.93416 * 179.91446 * 14 13 12 16 16 N 1.30387 * 110.15608 * 0.38776 * 15 14 13 17 17 C 1.34320 * 108.95755 * 359.76475 * 16 15 14 18 18 H 0.97002 * 120.00108 * 359.97438 * 1 2 3 19 19 H 1.07992 * 118.85955 * 180.02562 * 11 10 9 20 20 H 1.08001 * 120.07828 * 179.97438 * 12 11 10 21 21 H 1.07998 * 124.92100 * 180.11651 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2759 2.7464 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0078 -1.2139 0.0005 8 1 3.0878 -1.2140 0.0001 9 6 1.3046 -2.4319 0.0005 10 7 -0.0347 -2.4422 0.0005 11 6 -0.7211 -3.5626 0.0000 12 6 -0.1084 -4.8063 -0.0010 13 6 1.2762 -4.8940 -0.0011 14 8 2.1713 -5.9009 0.0033 15 6 3.4009 -5.3611 -0.0015 16 7 3.3202 -4.0597 -0.0005 17 6 2.0253 -3.7028 -0.0001 18 1 -0.4850 0.8401 0.0004 19 1 -1.7999 -3.5130 -0.0004 20 1 -0.7075 -5.7049 -0.0010 21 1 4.3229 -5.9234 -0.0015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259809094.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = 17.795561 kcal Electronic energy + Delta-G solvation = -11024.621073 eV Core-core repulsion = 8866.030260 eV Total energy + Delta-G solvation = -2158.590814 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 190.048 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.71545 -39.10489 -35.76100 -35.30259 -31.97060 -30.98387 -27.75181 -24.55172 -23.89439 -22.38002 -19.91183 -18.50304 -18.14294 -17.31269 -16.89719 -16.04736 -15.34411 -14.86675 -14.23768 -13.95896 -13.53517 -12.93895 -12.86954 -12.59246 -12.25682 -11.97825 -11.30882 -11.17812 -10.05274 -9.86457 -9.33500 -8.58840 -6.71490 0.23996 0.90287 1.38406 1.52068 1.53169 1.90465 2.03548 2.15394 2.63522 3.49758 3.67404 4.14251 4.21297 4.41185 4.65437 4.90229 5.06364 5.18930 5.52429 5.70080 5.86776 6.04626 6.29145 6.59269 7.09613 7.95276 8.15830 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.053921 B = 0.013597 C = 0.010900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.149120 B = 2058.803488 C = 2568.110143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.016 3.984 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.255 1.255 6 H -0.257 1.257 7 C -0.394 4.394 8 H 0.093 0.907 9 C 0.261 3.739 10 N -0.533 5.533 11 C 0.159 3.841 12 C -0.333 4.333 13 C 0.056 3.944 14 O -0.229 6.229 15 C 0.137 3.863 16 N -0.480 5.480 17 C -0.163 4.163 18 H 0.295 0.705 19 H 0.168 0.832 20 H 0.132 0.868 21 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -1.356 -0.007 2.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.210 4.210 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.179 1.179 6 H -0.181 1.181 7 C -0.423 4.423 8 H 0.112 0.888 9 C 0.136 3.864 10 N -0.250 5.250 11 C -0.005 4.005 12 C -0.358 4.358 13 C 0.001 3.999 14 O -0.120 6.120 15 C -0.091 4.091 16 N -0.207 5.207 17 C -0.282 4.282 18 H 0.106 0.894 19 H 0.185 0.815 20 H 0.150 0.850 21 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 2.165 -0.022 -0.004 2.165 hybrid contribution 0.152 -1.042 0.001 1.053 sum 2.317 -1.064 -0.002 2.550 Atomic orbital electron populations 1.70121 1.09089 1.30960 1.23356 1.27276 0.96016 1.04941 0.92756 0.84984 0.78699 0.74058 0.80438 1.18069 1.17858 1.18078 1.20134 0.95522 0.90139 1.36474 0.88849 1.19491 0.88073 0.89370 0.89444 1.68899 1.05371 1.27370 1.23353 1.22910 1.00545 0.86893 0.90135 1.20226 0.87943 0.99866 1.27753 1.20670 0.93361 0.85778 1.00116 1.84280 1.17123 1.35690 1.74881 1.28933 0.87941 0.88555 1.03637 1.69581 1.20505 1.13756 1.16850 1.21933 0.89168 0.96566 1.20488 0.89403 0.81485 0.85036 0.68805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -36.21 11.49 21.86 0.25 -35.96 14 2 C 0.02 0.80 5.50 85.33 0.47 1.27 14 3 Si 1.00 35.90 29.56 68.60 2.03 37.93 14 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 14 5 H -0.26 -8.33 7.11 99.48 0.71 -7.62 14 6 H -0.26 -9.01 7.11 99.48 0.71 -8.31 14 7 C -0.39 -21.61 9.18 23.33 0.21 -21.40 14 8 H 0.09 5.00 7.85 -2.91 -0.02 4.97 14 9 C 0.26 15.11 6.72 41.45 0.28 15.39 14 10 N -0.53 -29.70 7.90 -185.00 -1.46 -31.16 14 11 C 0.16 7.64 11.11 84.86 0.94 8.59 14 12 C -0.33 -15.58 10.09 22.49 0.23 -15.35 14 13 C 0.06 2.85 7.51 23.00 0.17 3.02 14 14 O -0.23 -9.97 10.77 -6.46 -0.07 -10.04 14 15 C 0.14 5.25 13.14 130.46 1.71 6.96 14 16 N -0.48 -23.48 11.28 -303.22 -3.42 -26.90 14 17 C -0.16 -8.92 7.24 41.41 0.30 -8.62 14 18 H 0.29 13.02 8.29 -92.71 -0.77 12.25 14 19 H 0.17 6.60 8.06 -2.91 -0.02 6.57 14 20 H 0.13 5.23 8.06 -2.91 -0.02 5.21 14 21 H 0.30 6.74 8.06 -2.91 -0.02 6.72 14 Total: -1.00 -67.67 203.12 2.91 -64.77 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.26 Total: 11.50 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.32 Total: -10.14 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -4.63 Total: -94.02 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.07 Total: -10.04 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -67.67 2.91 -64.77 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809094.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.561 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds