Wall clock time and date at job start Mon Mar 30 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86796 * 120.00262 * 2 1 4 4 H 1.48501 * 109.47229 * 89.99780 * 3 2 1 5 5 H 1.48496 * 109.47201 * 210.00070 * 3 2 1 6 6 H 1.48507 * 109.47000 * 330.00171 * 3 2 1 7 7 C 1.39906 * 119.99500 * 180.27369 * 2 1 3 8 8 H 1.08001 * 120.00011 * 179.97438 * 7 2 1 9 9 C 1.41054 * 120.00548 * 0.02562 * 7 2 1 10 10 N 1.35280 * 119.19612 * 359.72647 * 9 7 2 11 11 C 1.31052 * 121.60619 * 179.66778 * 10 9 7 12 12 C 1.40780 * 119.76111 * 0.63312 * 11 10 9 13 13 C 1.38222 * 133.53954 * 179.69328 * 12 11 10 14 14 C 1.39896 * 107.03777 * 179.97438 * 13 12 11 15 15 C 1.35692 * 108.04371 * 0.02562 * 14 13 12 16 16 N 1.35712 * 108.97747 * 359.97438 * 15 14 13 17 17 N 1.32710 * 119.20697 * 180.02562 * 9 7 2 18 18 H 0.97005 * 119.99675 * 359.72421 * 1 2 3 19 19 H 1.07999 * 120.11370 * 180.28465 * 11 10 9 20 20 H 1.07999 * 126.47850 * 359.96510 * 13 12 11 21 21 H 1.08005 * 125.97606 * 180.02562 * 14 13 12 22 22 H 1.07999 * 125.50443 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 1.4001 5 1 3.5397 1.4401 -0.7000 6 1 1.4396 2.6527 -0.7000 7 6 2.0076 -1.2117 -0.0058 8 1 3.0876 -1.2118 -0.0062 9 6 1.3023 -2.4332 -0.0122 10 7 -0.0504 -2.4143 -0.0070 11 6 -0.7528 -3.5206 -0.0190 12 6 -0.0956 -4.7656 -0.0243 13 6 -0.5372 -6.0753 -0.0309 14 6 0.5992 -6.8911 -0.0344 15 6 1.6930 -6.0881 -0.0293 16 7 1.2893 -4.7924 -0.0234 17 7 1.9817 -3.5732 -0.0171 18 1 -0.4850 0.8401 0.0040 19 1 -1.8319 -3.4773 -0.0191 20 1 -1.5653 -6.4063 -0.0329 21 1 0.6050 -7.9711 -0.0401 22 1 2.7189 -6.4256 -0.0307 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259832631.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:09 Heat of formation + Delta-G solvation = 91.846154 kcal Electronic energy + Delta-G solvation = -10855.423530 eV Core-core repulsion = 8797.762453 eV Total energy + Delta-G solvation = -2057.661077 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.20160 -38.60708 -35.44388 -34.02456 -31.39500 -29.65437 -27.96507 -24.88913 -23.07680 -21.35273 -19.89040 -19.03461 -17.50661 -16.58028 -16.08497 -15.73197 -15.06736 -14.39135 -13.77025 -13.61679 -13.31881 -13.06155 -12.85321 -12.75665 -12.01223 -11.76564 -11.72798 -11.09899 -9.83606 -9.53719 -8.68400 -8.62903 -6.97302 0.11195 1.00659 1.37255 1.50456 1.54677 1.93640 2.14590 2.19083 2.57099 3.46669 3.70577 3.89526 4.18305 4.48100 4.61576 4.88910 5.06114 5.27390 5.35656 5.49752 5.96084 6.07126 6.20126 6.33728 6.52320 6.95566 7.97753 8.19948 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.093037 B = 0.010930 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.884196 B = 2561.121820 C = 2852.159943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.030 3.970 3 Si 1.009 2.991 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.255 1.255 7 C -0.425 4.425 8 H 0.092 0.908 9 C 0.342 3.658 10 N -0.493 5.493 11 C 0.199 3.801 12 C -0.147 4.147 13 C -0.148 4.148 14 C -0.192 4.192 15 C -0.014 4.014 16 N -0.251 5.251 17 N -0.514 5.514 18 H 0.293 0.707 19 H 0.198 0.802 20 H 0.175 0.825 21 H 0.184 0.816 22 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 -2.856 -0.037 3.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.196 4.196 3 Si 0.826 3.174 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.179 1.179 7 C -0.464 4.464 8 H 0.110 0.890 9 C 0.099 3.901 10 N -0.206 5.206 11 C 0.003 3.997 12 C -0.261 4.261 13 C -0.178 4.178 14 C -0.216 4.216 15 C -0.157 4.157 16 N -0.008 5.008 17 N -0.351 5.351 18 H 0.104 0.896 19 H 0.214 0.786 20 H 0.193 0.807 21 H 0.201 0.799 22 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.545 -1.770 -0.031 2.349 hybrid contribution 0.039 -0.040 0.005 0.056 sum -1.506 -1.810 -0.026 2.354 Atomic orbital electron populations 1.70173 1.08855 1.30685 1.26463 1.27139 0.96094 1.04639 0.91705 0.84823 0.78650 0.73894 0.79994 1.18080 1.18160 1.17889 1.19428 0.95186 0.88089 1.43721 0.88988 1.21180 0.87120 0.92316 0.89467 1.69515 1.07862 1.28566 1.14630 1.23818 1.01883 0.85377 0.88667 1.20659 0.86058 0.98529 1.20850 1.21390 1.00419 0.88458 1.07550 1.21213 0.90077 1.00155 1.10128 1.22094 1.01619 0.78792 1.13178 1.46042 1.05542 1.05720 1.43446 1.77114 1.19998 0.88574 1.49424 0.89612 0.78565 0.80743 0.79926 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.79 11.39 21.82 0.25 -37.55 14 2 C 0.03 1.48 5.49 85.25 0.47 1.94 14 3 Si 1.01 36.59 29.56 68.60 2.03 38.62 14 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 14 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 14 6 H -0.26 -8.47 7.11 99.48 0.71 -7.76 14 7 C -0.42 -24.05 9.34 23.37 0.22 -23.83 14 8 H 0.09 5.06 7.84 -2.91 -0.02 5.04 14 9 C 0.34 20.52 7.46 134.67 1.00 21.52 14 10 N -0.49 -27.62 7.82 -192.76 -1.51 -29.13 14 11 C 0.20 9.44 11.33 85.43 0.97 10.41 14 12 C -0.15 -6.86 6.85 38.70 0.27 -6.60 14 13 C -0.15 -5.36 10.98 22.67 0.25 -5.11 14 14 C -0.19 -6.55 10.81 22.08 0.24 -6.31 14 15 C -0.01 -0.59 11.89 83.50 0.99 0.40 14 16 N -0.25 -13.05 4.03 -187.37 -0.76 -13.81 14 17 N -0.51 -30.62 11.95 -56.27 -0.67 -31.29 14 18 H 0.29 13.06 8.30 -92.70 -0.77 12.29 14 19 H 0.20 7.20 8.06 -2.91 -0.02 7.18 14 20 H 0.18 4.75 8.06 -2.91 -0.02 4.72 14 21 H 0.18 4.44 8.06 -2.91 -0.02 4.41 14 22 H 0.17 6.23 8.06 -2.91 -0.02 6.21 14 Total: -1.00 -70.38 208.58 4.98 -65.40 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.24 Total: 15.35 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.40 Total: -7.59 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -2.69 Total: -111.77 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -70.38 4.98 -65.40 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259832631.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.243 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds