Wall clock time and date at job start Mon Mar 30 2020 02:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47190 * 300.00280 * 3 2 1 6 6 H 1.48495 * 109.47353 * 60.00354 * 3 2 1 7 7 C 1.37882 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00137 * 186.16401 * 7 2 1 9 9 C 1.50705 * 119.99680 * 6.16934 * 7 2 1 10 10 C 1.50700 * 115.55813 * 279.38486 * 9 7 2 11 11 C 1.38226 * 119.61971 * 310.25872 * 10 9 7 12 12 C 1.38632 * 119.16094 * 179.97438 * 11 10 9 13 13 C 1.38670 * 118.41887 * 359.97438 * 12 11 10 14 14 C 1.38182 * 119.16612 * 0.02562 * 13 12 11 15 15 N 1.31848 * 119.61729 * 129.98522 * 10 9 7 16 16 C 1.52995 * 117.50317 * 65.07731 * 9 7 2 17 17 C 1.52992 * 117.49951 * 133.70112 * 9 7 2 18 18 H 0.96999 * 119.99968 * 354.97329 * 1 2 3 19 19 H 1.08004 * 120.42286 * 359.95585 * 11 10 9 20 20 H 1.08000 * 120.78940 * 180.02562 * 12 11 10 21 21 H 1.08003 * 120.41731 * 180.02562 * 13 12 11 22 22 H 1.08001 * 119.61745 * 179.97438 * 14 13 12 23 23 H 1.09009 * 117.49655 * 359.97438 * 16 9 7 24 24 H 1.08997 * 117.49953 * 214.98155 * 16 9 7 25 25 H 1.09005 * 117.50336 * 145.01881 * 17 9 7 26 26 H 1.09000 * 117.49813 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0798 -1.1968 0.0999 9 6 1.2575 -2.4953 -0.1414 10 6 0.6189 -3.0182 1.1195 11 6 1.3661 -3.1027 2.2794 12 6 0.7690 -3.5846 3.4340 13 6 -0.5635 -3.9647 3.3787 14 6 -1.2469 -3.8518 2.1830 15 7 -0.6475 -3.3847 1.1050 16 6 0.5280 -2.7519 -1.4615 17 6 1.8082 -3.5224 -1.1326 18 1 -0.4850 0.8368 0.0736 19 1 2.4021 -2.7974 2.2860 20 1 1.3280 -3.6614 4.3548 21 1 -1.0609 -4.3442 4.2590 22 1 -2.2847 -4.1462 2.1315 23 1 0.5880 -1.9793 -2.2281 24 1 -0.4138 -3.2989 -1.4181 25 1 1.7087 -4.5763 -0.8729 26 1 2.7106 -3.2567 -1.6832 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858247.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:03 Heat of formation + Delta-G solvation = 38.880752 kcal Electronic energy + Delta-G solvation = -11225.363636 eV Core-core repulsion = 9268.946151 eV Total energy + Delta-G solvation = -1956.417486 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.86742 -37.79169 -34.06062 -33.01050 -31.54160 -27.71818 -24.62748 -24.12587 -22.75344 -21.22883 -18.60222 -17.24521 -16.67380 -16.57160 -16.08022 -15.43580 -14.77724 -14.29453 -13.91903 -13.55421 -13.05858 -12.88836 -12.70354 -12.28875 -12.05363 -11.50854 -11.09136 -10.62441 -10.53641 -10.33446 -9.90371 -9.37221 -8.09055 -6.26390 0.51935 0.67443 1.39921 1.42825 1.53781 2.40731 3.09446 3.15909 3.54351 3.89978 4.11707 4.19019 4.45283 4.56433 4.57386 4.79266 4.90379 4.93923 5.08356 5.23819 5.35208 5.45125 5.60460 5.72580 5.72882 6.17912 6.32592 6.80896 7.41985 7.52185 8.96568 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.039370 B = 0.014586 C = 0.012874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.032449 B = 1919.129124 C = 2174.328528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.047 3.953 10 C 0.182 3.818 11 C -0.181 4.181 12 C -0.082 4.082 13 C -0.194 4.194 14 C 0.073 3.927 15 N -0.516 5.516 16 C -0.151 4.151 17 C -0.172 4.172 18 H 0.257 0.743 19 H 0.127 0.873 20 H 0.161 0.839 21 H 0.165 0.835 22 H 0.168 0.832 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -5.892 5.756 8.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.046 3.954 10 C 0.045 3.955 11 C -0.201 4.201 12 C -0.108 4.108 13 C -0.213 4.213 14 C -0.084 4.084 15 N -0.225 5.225 16 C -0.188 4.188 17 C -0.210 4.210 18 H 0.066 0.934 19 H 0.145 0.855 20 H 0.179 0.821 21 H 0.182 0.818 22 H 0.185 0.815 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.518 -5.704 4.914 7.547 hybrid contribution 0.547 1.072 0.586 1.339 sum 1.065 -4.631 5.501 7.269 Atomic orbital electron populations 1.70212 1.07317 1.27052 1.48798 1.25800 0.95524 1.02277 0.94080 0.85559 0.79448 0.79593 0.77406 1.18449 1.20804 1.20918 1.20648 0.92879 0.89191 1.51879 0.91838 1.17728 0.98463 0.93943 0.85276 1.21106 0.88696 0.89707 0.95948 1.21979 1.02040 1.02142 0.93983 1.21881 0.95508 0.95162 0.98217 1.22308 0.95519 1.03657 0.99859 1.23217 1.00850 0.95354 0.89002 1.67451 1.11288 1.11389 1.32402 1.22320 0.94232 1.01364 1.00933 1.22979 0.97602 0.95653 1.04724 0.93380 0.85482 0.82141 0.81768 0.81520 0.92152 0.91049 0.90048 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.15 13.11 21.45 0.28 -52.86 15 2 C 0.02 1.38 5.42 84.66 0.46 1.84 15 3 Si 0.95 43.47 29.55 68.60 2.03 45.50 15 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 7 C -0.51 -27.83 8.35 25.60 0.21 -27.62 15 8 H 0.06 3.38 7.82 -2.91 -0.02 3.36 15 9 C 0.05 2.43 1.60 -53.68 -0.09 2.34 15 10 C 0.18 8.88 6.16 42.55 0.26 9.14 15 11 C -0.18 -7.66 9.43 22.36 0.21 -7.45 15 12 C -0.08 -2.71 10.18 22.47 0.23 -2.49 15 13 C -0.19 -6.01 10.11 22.36 0.23 -5.79 15 14 C 0.07 2.71 11.18 84.67 0.95 3.66 15 15 N -0.52 -24.40 9.42 -183.89 -1.73 -26.13 15 16 C -0.15 -7.60 9.48 30.59 0.29 -7.31 15 17 C -0.17 -7.67 9.94 30.59 0.30 -7.37 15 18 H 0.26 14.59 8.32 -92.71 -0.77 13.82 15 19 H 0.13 5.23 7.95 -2.91 -0.02 5.20 15 20 H 0.16 3.91 8.06 -2.91 -0.02 3.88 15 21 H 0.16 3.54 8.06 -2.91 -0.02 3.52 15 22 H 0.17 5.00 8.06 -2.91 -0.02 4.98 15 23 H 0.06 3.19 8.14 -2.38 -0.02 3.17 15 24 H 0.07 3.61 7.64 -2.39 -0.02 3.59 15 25 H 0.08 3.32 8.14 -2.38 -0.02 3.30 15 26 H 0.09 3.88 8.14 -2.39 -0.02 3.86 15 Total: -1.00 -65.29 235.58 4.79 -60.50 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.16 Total: 14.04 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 3.05 Total: -41.05 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.45 Total: -78.99 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.29 4.79 -60.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858247.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.383 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds