Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48496 * 109.47290 * 240.00256 * 3 2 1 5 5 H 1.48501 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.46946 * 119.99843 * 3 2 1 7 7 C 1.40153 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.40582 * 120.00292 * 359.97438 * 7 2 1 10 10 N 1.34135 * 120.98356 * 0.02562 * 9 7 2 11 11 N 1.28141 * 122.20392 * 179.97438 * 10 9 7 12 12 C 1.32178 * 124.05147 * 359.97438 * 11 10 9 13 13 C 1.38890 * 120.44543 * 0.03209 * 12 11 10 14 14 N 1.37267 * 135.28591 * 179.97438 * 13 12 11 15 15 H 0.97005 * 125.55682 * 359.97438 * 14 13 12 16 16 C 1.36536 * 108.88597 * 179.97438 * 14 13 12 17 17 C 1.35185 * 109.57169 * 359.97438 * 16 14 13 18 18 C 1.40439 * 107.76603 * 0.26750 * 17 16 14 19 19 H 0.96999 * 120.00433 * 359.97438 * 1 2 3 20 20 H 1.07997 * 119.77550 * 180.02562 * 12 11 10 21 21 H 1.08000 * 125.21690 * 179.97438 * 16 14 13 22 22 H 1.08002 * 126.11349 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0947 1.6965 -1.2125 5 1 1.2760 2.7464 -0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0078 -1.2138 -0.0005 8 1 3.0878 -1.2138 -0.0001 9 6 1.3050 -2.4313 -0.0005 10 7 -0.0362 -2.4544 -0.0005 11 7 -0.7003 -3.5502 -0.0010 12 6 -0.1473 -4.7508 -0.0021 13 6 1.2347 -4.8891 -0.0020 14 7 2.1091 -5.9472 -0.0025 15 1 1.8602 -6.8847 -0.0026 16 6 3.3865 -5.4649 -0.0027 17 6 3.3602 -4.1133 -0.0030 18 6 2.0147 -3.7108 0.0033 19 1 -0.4851 0.8400 0.0004 20 1 -0.7744 -5.6301 -0.0028 21 1 4.2808 -6.0703 -0.0027 22 1 4.2201 -3.4599 -0.0029 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259896646.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = 78.385933 kcal Electronic energy + Delta-G solvation = -10898.016345 eV Core-core repulsion = 8839.771589 eV Total energy + Delta-G solvation = -2058.244756 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.30982 -36.99804 -33.97563 -31.14767 -29.33377 -28.78710 -25.95921 -22.23602 -21.54655 -19.81300 -17.95662 -17.30717 -15.32033 -15.00268 -14.40715 -13.77500 -13.30746 -13.05570 -12.27642 -11.94688 -11.39457 -11.28209 -11.02955 -10.97846 -10.42525 -9.70258 -8.94837 -8.72414 -7.70047 -7.65782 -7.19521 -6.65319 -4.65950 2.34579 2.91872 3.02886 3.05323 3.17995 3.72842 3.83539 3.94191 4.67222 5.64904 5.80993 5.94235 6.09315 6.26215 6.47972 6.63178 6.87832 6.94903 7.32600 7.48964 7.75759 7.91140 8.18389 8.33517 8.51069 8.72210 10.09936 11.10516 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.054005 B = 0.013556 C = 0.010877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.343543 B = 2065.072702 C = 2573.574322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.059 3.941 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.387 4.387 8 H 0.090 0.910 9 C 0.227 3.773 10 N -0.310 5.310 11 N -0.214 5.214 12 C -0.114 4.114 13 C 0.081 3.919 14 N -0.572 5.572 15 H 0.406 0.594 16 C -0.033 4.033 17 C -0.155 4.155 18 C -0.194 4.194 19 H 0.282 0.718 20 H 0.121 0.879 21 H 0.156 0.844 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -3.831 -0.004 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.169 4.169 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.420 4.420 8 H 0.108 0.892 9 C 0.097 3.903 10 N -0.164 5.164 11 N -0.056 5.056 12 C -0.290 4.290 13 C -0.035 4.035 14 N -0.174 5.174 15 H 0.241 0.759 16 C -0.161 4.161 17 C -0.182 4.182 18 C -0.207 4.207 19 H 0.094 0.906 20 H 0.139 0.861 21 H 0.173 0.827 22 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.216 -2.925 -0.004 5.132 hybrid contribution 1.728 -0.781 0.001 1.896 sum 5.944 -3.706 -0.003 7.005 Atomic orbital electron populations 1.70065 1.07382 1.29060 1.24832 1.26244 0.95071 1.01603 0.94011 0.86213 0.80023 0.79594 0.80132 1.18634 1.19882 1.18631 1.19462 0.94766 0.89048 1.38688 0.89174 1.20790 0.90467 0.90130 0.88912 1.74280 1.04193 1.13000 1.24882 1.72217 1.34322 0.95137 1.03941 1.22099 0.88363 0.97650 1.20843 1.19059 0.93085 0.87278 1.04074 1.41513 1.05311 1.07102 1.63469 0.75895 1.21574 0.86437 0.94826 1.13281 1.20316 0.95916 0.93296 1.08630 1.20085 0.93381 0.93805 1.13423 0.90613 0.86145 0.82679 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -18.61 11.53 55.56 0.64 -17.97 14 2 C 0.06 1.49 5.50 -17.31 -0.10 1.39 14 3 Si 0.92 18.03 29.56 -169.99 -5.03 13.01 14 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 5 H -0.27 -5.24 7.11 56.52 0.40 -4.83 14 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 7 C -0.39 -10.33 9.18 -37.98 -0.35 -10.68 14 8 H 0.09 2.19 7.85 -52.49 -0.41 1.78 14 9 C 0.23 6.50 6.80 -82.73 -0.56 5.93 14 10 N -0.31 -9.35 9.15 33.29 0.30 -9.04 14 11 N -0.21 -6.07 11.40 30.65 0.35 -5.72 14 12 C -0.11 -2.83 11.31 -17.16 -0.19 -3.03 14 13 C 0.08 1.92 7.37 -84.02 -0.62 1.30 14 14 N -0.57 -10.47 6.11 -10.50 -0.06 -10.54 14 15 H 0.41 5.67 8.96 -40.82 -0.37 5.30 14 16 C -0.03 -0.58 11.86 -16.54 -0.20 -0.78 14 17 C -0.16 -3.28 10.80 -39.84 -0.43 -3.71 14 18 C -0.19 -4.97 6.28 -104.65 -0.66 -5.63 14 19 H 0.28 6.76 8.29 -40.82 -0.34 6.42 14 20 H 0.12 2.54 8.06 -52.49 -0.42 2.12 14 21 H 0.16 2.00 8.06 -52.49 -0.42 1.58 14 22 H 0.13 2.49 8.06 -52.49 -0.42 2.07 14 LS Contribution 207.44 15.07 3.13 3.13 Total: -1.00 -32.23 207.44 -4.95 -37.18 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -1.18 Total: 5.16 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.10 Total: -15.20 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 1.23 Total: -43.27 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -32.23 -4.95 -37.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896646.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.567 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds