Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48496 * 109.47290 * 240.00256 * 3 2 1 5 5 H 1.48501 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.46946 * 119.99843 * 3 2 1 7 7 C 1.40153 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.40582 * 120.00292 * 359.97438 * 7 2 1 10 10 N 1.34135 * 120.98356 * 0.02562 * 9 7 2 11 11 N 1.28141 * 122.20392 * 179.97438 * 10 9 7 12 12 C 1.32178 * 124.05147 * 359.97438 * 11 10 9 13 13 C 1.38890 * 120.44543 * 0.03209 * 12 11 10 14 14 N 1.37267 * 135.28591 * 179.97438 * 13 12 11 15 15 H 0.97005 * 125.55682 * 359.97438 * 14 13 12 16 16 C 1.36536 * 108.88597 * 179.97438 * 14 13 12 17 17 C 1.35185 * 109.57169 * 359.97438 * 16 14 13 18 18 C 1.40439 * 107.76603 * 0.26750 * 17 16 14 19 19 H 0.96999 * 120.00433 * 359.97438 * 1 2 3 20 20 H 1.07997 * 119.77550 * 180.02562 * 12 11 10 21 21 H 1.08000 * 125.21690 * 179.97438 * 16 14 13 22 22 H 1.08002 * 126.11349 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0947 1.6965 -1.2125 5 1 1.2760 2.7464 -0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0078 -1.2138 -0.0005 8 1 3.0878 -1.2138 -0.0001 9 6 1.3050 -2.4313 -0.0005 10 7 -0.0362 -2.4544 -0.0005 11 7 -0.7003 -3.5502 -0.0010 12 6 -0.1473 -4.7508 -0.0021 13 6 1.2347 -4.8891 -0.0020 14 7 2.1091 -5.9472 -0.0025 15 1 1.8602 -6.8847 -0.0026 16 6 3.3865 -5.4649 -0.0027 17 6 3.3602 -4.1133 -0.0030 18 6 2.0147 -3.7108 0.0033 19 1 -0.4851 0.8400 0.0004 20 1 -0.7744 -5.6301 -0.0028 21 1 4.2808 -6.0703 -0.0027 22 1 4.2201 -3.4599 -0.0029 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259896646.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = 54.659400 kcal Electronic energy + Delta-G solvation = -10899.045205 eV Core-core repulsion = 8839.771589 eV Total energy + Delta-G solvation = -2059.273616 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.03043 -38.88275 -35.86045 -32.98024 -31.16700 -30.54139 -27.87754 -24.07043 -23.42098 -21.44070 -19.73624 -19.13786 -17.10227 -16.75992 -16.25451 -15.55215 -14.97993 -14.73596 -13.80170 -13.79640 -13.11596 -12.94020 -12.91544 -12.71217 -12.02158 -11.50590 -10.90237 -10.54341 -9.67211 -9.46625 -8.94803 -8.49211 -6.64028 0.56781 1.09572 1.41350 1.57093 1.57301 2.05943 2.20269 2.41665 2.79279 3.81445 4.13754 4.29591 4.38451 4.53411 4.69020 4.93200 5.07303 5.22984 5.53254 5.70900 5.96972 6.14803 6.25718 6.61981 6.76330 6.92521 8.31022 9.12510 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.054005 B = 0.013556 C = 0.010877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.343543 B = 2065.072702 C = 2573.574322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.013 3.987 3 Si 1.003 2.997 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.421 4.421 8 H 0.103 0.897 9 C 0.188 3.812 10 N -0.362 5.362 11 N -0.267 5.267 12 C -0.095 4.095 13 C 0.047 3.953 14 N -0.546 5.546 15 H 0.431 0.569 16 C 0.026 3.974 17 C -0.198 4.198 18 C -0.218 4.218 19 H 0.288 0.712 20 H 0.155 0.845 21 H 0.221 0.779 22 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.407 -5.393 -0.006 9.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.454 4.454 8 H 0.121 0.879 9 C 0.057 3.943 10 N -0.213 5.213 11 N -0.105 5.105 12 C -0.273 4.273 13 C -0.070 4.070 14 N -0.149 5.149 15 H 0.271 0.729 16 C -0.105 4.105 17 C -0.223 4.223 18 C -0.232 4.232 19 H 0.099 0.901 20 H 0.172 0.828 21 H 0.238 0.762 22 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.764 -4.530 -0.006 8.141 hybrid contribution 1.023 -0.640 0.002 1.206 sum 7.787 -5.169 -0.004 9.346 Atomic orbital electron populations 1.70197 1.09550 1.30416 1.26456 1.27352 0.95786 1.05422 0.92502 0.84960 0.78432 0.73943 0.80587 1.17609 1.19101 1.17600 1.19879 0.95495 0.89704 1.40289 0.87891 1.21322 0.90732 0.92367 0.89878 1.74155 1.05467 1.14088 1.27606 1.72106 1.35343 0.96193 1.06846 1.22637 0.89903 0.97673 1.17105 1.18988 0.93059 0.88617 1.06371 1.41541 1.04784 1.07496 1.61052 0.72864 1.22521 0.87515 0.94049 1.06377 1.20658 0.94559 0.95485 1.11622 1.20542 0.95970 0.93567 1.13106 0.90104 0.82764 0.76231 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.13 11.53 21.86 0.25 -41.88 14 2 C 0.01 0.67 5.50 85.33 0.47 1.14 14 3 Si 1.00 37.52 29.56 68.60 2.03 39.55 14 4 H -0.25 -8.94 7.11 99.48 0.71 -8.23 14 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 14 6 H -0.25 -8.93 7.11 99.48 0.71 -8.23 14 7 C -0.42 -23.31 9.18 23.31 0.21 -23.10 14 8 H 0.10 5.13 7.85 -2.91 -0.02 5.11 14 9 C 0.19 11.25 6.80 41.47 0.28 11.53 14 10 N -0.36 -23.03 9.15 -48.59 -0.44 -23.47 14 11 N -0.27 -15.75 11.40 -56.94 -0.65 -16.40 14 12 C -0.09 -4.68 11.31 84.80 0.96 -3.72 14 13 C 0.05 2.14 7.37 39.20 0.29 2.42 14 14 N -0.55 -17.52 6.11 -187.13 -1.14 -18.66 14 15 H 0.43 9.66 8.96 -92.70 -0.83 8.83 14 16 C 0.03 0.76 11.86 83.26 0.99 1.75 14 17 C -0.20 -7.85 10.80 22.10 0.24 -7.62 14 18 C -0.22 -11.17 6.28 -19.88 -0.12 -11.30 14 19 H 0.29 14.53 8.29 -92.71 -0.77 13.76 14 20 H 0.16 6.26 8.06 -2.91 -0.02 6.24 14 21 H 0.22 3.75 8.06 -2.91 -0.02 3.72 14 22 H 0.15 5.22 8.06 -2.91 -0.02 5.19 14 Total: -1.00 -75.95 207.44 3.78 -72.16 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.43 Total: 17.59 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.31 Total: -28.89 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -1.99 Total: -100.41 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -75.95 3.78 -72.16 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896646.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.822 kcal (2) G-P(sol) polarization free energy of solvation -75.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds