Wall clock time and date at job start Mon Mar 30 2020 02:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31060 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48494 * 109.47266 * 270.00280 * 3 2 1 5 5 H 1.48507 * 109.46996 * 29.99879 * 3 2 1 6 6 H 1.48501 * 109.47028 * 149.99852 * 3 2 1 7 7 C 1.39750 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.40187 * 120.00765 * 0.02562 * 7 2 1 10 10 N 1.35006 * 126.63080 * 359.97228 * 9 7 2 11 11 C 1.30488 * 109.82230 * 180.02562 * 10 9 7 12 12 N 1.36065 * 110.14179 * 0.02562 * 11 10 9 13 13 N 1.39885 * 133.11496 * 179.97438 * 12 11 10 14 14 C 1.30809 * 120.73404 * 179.97438 * 13 12 11 15 15 C 1.39813 * 121.04499 * 0.02562 * 14 13 12 16 16 C 1.38113 * 119.83491 * 359.97438 * 15 14 13 17 17 C 1.37692 * 107.21429 * 359.97438 * 12 11 10 18 18 H 0.97003 * 120.00439 * 359.97438 * 1 2 3 19 19 H 1.07998 * 124.92389 * 180.26381 * 11 10 9 20 20 H 1.08004 * 119.47709 * 179.97438 * 14 13 12 21 21 H 1.08002 * 120.08388 * 180.02562 * 15 14 13 22 22 H 1.08002 * 120.54287 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 2.4921 2.0464 -1.4000 5 1 1.4420 2.6527 0.7000 6 1 3.5421 1.4401 0.7001 7 6 2.0093 -1.2103 0.0005 8 1 3.0893 -1.2103 0.0001 9 6 1.3084 -2.4244 0.0005 10 7 -0.0326 -2.5804 0.0006 11 6 -0.3303 -3.8509 0.0011 12 7 0.8066 -4.5985 0.0020 13 7 1.0443 -5.9770 0.0033 14 6 2.2660 -6.4447 0.0035 15 6 3.3676 -5.5838 0.0029 16 6 3.1713 -4.2167 0.0016 17 6 1.8697 -3.7235 0.0015 18 1 -0.4851 0.8400 0.0004 19 1 -1.3335 -4.2508 -0.0028 20 1 2.4262 -7.5128 0.0049 21 1 4.3696 -5.9867 0.0027 22 1 4.0140 -3.5412 0.0016 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901955.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:02 Heat of formation + Delta-G solvation = 87.438647 kcal Electronic energy + Delta-G solvation = -10870.584888 eV Core-core repulsion = 8812.732687 eV Total energy + Delta-G solvation = -2057.852201 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.33015 -38.18567 -35.54865 -33.50533 -31.75570 -30.28722 -26.91746 -24.97772 -23.14364 -22.03349 -19.24011 -17.89289 -17.56207 -17.04308 -16.12314 -16.09989 -15.00375 -14.60298 -13.99568 -13.40028 -13.30435 -12.83809 -12.77222 -12.58939 -11.95033 -11.49710 -10.96675 -10.95596 -10.41967 -10.15104 -8.71820 -8.53672 -6.22886 0.01685 0.88539 1.43328 1.48266 1.58974 1.76713 2.23568 2.44058 2.72851 3.50527 3.85400 4.12179 4.17975 4.44418 4.63750 4.88450 5.14031 5.29865 5.32005 5.57053 5.70932 6.15354 6.22952 6.65825 6.84607 7.40218 7.73813 8.39392 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.066225 B = 0.012166 C = 0.010315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.700680 B = 2300.914049 C = 2713.773563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.021 3.979 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.437 4.437 8 H 0.099 0.901 9 C 0.202 3.798 10 N -0.512 5.512 11 C 0.205 3.795 12 N -0.328 5.328 13 N -0.358 5.358 14 C 0.153 3.847 15 C -0.331 4.331 16 C 0.041 3.959 17 C -0.224 4.224 18 H 0.285 0.715 19 H 0.216 0.784 20 H 0.219 0.781 21 H 0.161 0.839 22 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -3.516 0.011 6.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.200 4.200 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.471 4.471 8 H 0.117 0.883 9 C 0.073 3.927 10 N -0.237 5.237 11 C -0.076 4.076 12 N -0.105 5.105 13 N -0.168 5.168 14 C -0.038 4.038 15 C -0.354 4.354 16 C 0.015 3.985 17 C -0.326 4.326 18 H 0.096 0.904 19 H 0.232 0.768 20 H 0.235 0.765 21 H 0.179 0.821 22 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.976 -3.271 0.015 5.148 hybrid contribution 1.176 0.268 -0.013 1.206 sum 5.152 -3.003 0.002 5.963 Atomic orbital electron populations 1.70205 1.09051 1.30084 1.30585 1.27074 0.95809 1.04910 0.92168 0.84953 0.78890 0.74792 0.79551 1.18608 1.19338 1.17373 1.19116 0.95049 0.89067 1.43824 0.88295 1.18907 0.88472 0.91203 0.94094 1.71032 1.14775 1.12490 1.25420 1.25647 0.91602 0.85725 1.04577 1.46734 1.07016 1.02578 1.54222 1.75237 1.24077 0.91066 1.26428 1.24257 0.88013 1.02501 0.89040 1.21404 1.00643 0.92119 1.21223 1.20898 0.93409 0.96621 0.87526 1.19902 0.90594 0.92098 1.30031 0.90438 0.76788 0.76507 0.82136 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.11 11.94 21.80 0.26 -41.85 14 2 C 0.02 1.05 5.49 85.17 0.47 1.52 14 3 Si 1.00 37.21 29.56 68.60 2.03 39.24 14 4 H -0.26 -9.38 7.11 99.48 0.71 -8.68 14 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 14 6 H -0.25 -8.81 7.11 99.48 0.71 -8.10 14 7 C -0.44 -23.53 9.34 23.11 0.22 -23.32 14 8 H 0.10 4.84 7.84 -2.91 -0.02 4.82 14 9 C 0.20 11.55 6.71 39.94 0.27 11.81 14 10 N -0.51 -29.45 9.42 -191.14 -1.80 -31.25 14 11 C 0.21 10.41 12.96 179.94 2.33 12.74 14 12 N -0.33 -16.51 4.03 -190.05 -0.77 -17.28 14 13 N -0.36 -15.45 11.93 -57.07 -0.68 -16.13 14 14 C 0.15 5.24 11.28 85.23 0.96 6.20 14 15 C -0.33 -11.41 10.12 22.62 0.23 -11.18 14 16 C 0.04 1.75 10.14 22.47 0.23 1.98 14 17 C -0.22 -11.61 6.86 39.26 0.27 -11.34 14 18 H 0.29 13.90 8.30 -92.71 -0.77 13.13 14 19 H 0.22 8.94 8.06 -2.91 -0.02 8.92 14 20 H 0.22 4.82 8.06 -2.91 -0.02 4.79 14 21 H 0.16 4.10 8.06 -2.91 -0.02 4.07 14 22 H 0.14 5.33 8.06 -2.91 -0.02 5.30 14 Total: -1.00 -68.74 209.49 5.25 -63.49 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.23 Total: 15.35 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.97 Total: -11.58 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -2.99 Total: -106.51 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -68.74 5.25 -63.49 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901955.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.933 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds