Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00202 * 2 1 4 4 H 1.48497 * 109.47153 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47048 * 120.00426 * 3 2 1 6 6 H 1.48497 * 109.47167 * 240.00271 * 3 2 1 7 7 C 1.37883 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00396 * 186.40086 * 7 2 1 9 9 C 1.50705 * 119.99410 * 6.40175 * 7 2 1 10 10 C 1.50705 * 115.54651 * 275.29885 * 9 7 2 11 11 C 1.38647 * 120.78822 * 113.67394 * 10 9 7 12 12 C 1.38203 * 119.15896 * 179.75334 * 11 10 9 13 13 N 1.31862 * 120.76627 * 0.52706 * 12 11 10 14 14 C 1.31867 * 121.72562 * 359.74435 * 13 12 11 15 15 C 1.38197 * 120.76384 * 359.97438 * 14 13 12 16 16 C 1.52991 * 117.49964 * 129.63250 * 9 7 2 17 17 C 1.52998 * 117.49914 * 60.96922 * 9 7 2 18 18 H 0.96999 * 119.99825 * 354.97209 * 1 2 3 19 19 H 1.07998 * 120.42247 * 359.97438 * 11 10 9 20 20 H 1.08005 * 119.61700 * 180.24528 * 12 11 10 21 21 H 1.08004 * 119.61723 * 180.02562 * 14 13 12 22 22 H 1.08008 * 120.41823 * 180.02562 * 15 14 13 23 23 H 1.09009 * 117.49957 * 359.97438 * 16 9 7 24 24 H 1.09003 * 117.50306 * 145.01742 * 16 9 7 25 25 H 1.09001 * 117.49557 * 214.97612 * 17 9 7 26 26 H 1.08994 * 117.49937 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0795 -1.1971 0.1037 9 6 1.2580 -2.4950 -0.1466 10 6 0.6969 -3.0692 1.1288 11 6 -0.6727 -3.1595 1.3242 12 6 -1.1506 -3.6965 2.5046 13 7 -0.3207 -4.1101 3.4421 14 6 0.9873 -4.0345 3.2929 15 6 1.5381 -3.5144 2.1370 16 6 1.7563 -3.4803 -1.2057 17 6 0.4541 -2.7078 -1.4309 18 1 -0.4850 0.8368 0.0736 19 1 -1.3575 -2.8179 0.5621 20 1 -2.2161 -3.7740 2.6628 21 1 1.6357 -4.3839 4.0829 22 1 2.6102 -3.4555 2.0206 23 1 2.6239 -3.1875 -1.7971 24 1 1.6779 -4.5439 -0.9802 25 1 -0.4804 -3.2635 -1.3533 26 1 0.4648 -1.9067 -2.1699 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921811.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = 52.410172 kcal Electronic energy + Delta-G solvation = -11202.617226 eV Core-core repulsion = 9246.786420 eV Total energy + Delta-G solvation = -1955.830806 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.31027 -36.35552 -32.08526 -30.86933 -30.31676 -25.77996 -23.03541 -22.67463 -20.96269 -19.48208 -16.78992 -15.45434 -15.09071 -14.65822 -14.54241 -13.76674 -13.08945 -12.80592 -12.73007 -11.74323 -11.20998 -11.01456 -10.77850 -10.60766 -10.31752 -9.86911 -9.57975 -8.78478 -8.50977 -8.43286 -8.29754 -8.08866 -6.14011 -4.22569 2.01065 2.27292 3.24724 3.29870 3.31993 4.30742 4.69259 5.12118 5.17676 5.21681 5.67133 5.78338 6.03457 6.16589 6.25058 6.37132 6.52380 6.60597 6.63504 6.72339 6.99659 7.29937 7.36460 7.52055 7.66310 7.76961 8.25934 8.74376 8.77729 9.43161 10.93139 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.039478 B = 0.014054 C = 0.012752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.077643 B = 1991.779766 C = 2195.195703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.894 3.106 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.496 4.496 8 H 0.063 0.937 9 C 0.065 3.935 10 C 0.043 3.957 11 C -0.155 4.155 12 C 0.078 3.922 13 N -0.512 5.512 14 C 0.077 3.923 15 C -0.168 4.168 16 C -0.200 4.200 17 C -0.154 4.154 18 H 0.263 0.737 19 H 0.129 0.871 20 H 0.141 0.859 21 H 0.141 0.859 22 H 0.125 0.875 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 -4.486 0.928 4.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.131 4.131 3 Si 0.721 3.279 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.064 3.936 10 C 0.034 3.966 11 C -0.175 4.175 12 C -0.078 4.078 13 N -0.222 5.222 14 C -0.079 4.079 15 C -0.188 4.188 16 C -0.237 4.237 17 C -0.192 4.192 18 H 0.073 0.927 19 H 0.147 0.853 20 H 0.158 0.842 21 H 0.159 0.841 22 H 0.143 0.857 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.026 -4.698 1.632 4.973 hybrid contribution 0.706 1.448 -0.714 1.762 sum 0.680 -3.249 0.919 3.445 Atomic orbital electron populations 1.69962 1.05897 1.27133 1.47531 1.25015 0.94914 0.99090 0.94084 0.86629 0.79675 0.82793 0.78806 1.21150 1.20142 1.19991 1.20303 0.92817 0.87956 1.52307 0.91843 1.17671 0.98283 0.93750 0.83851 1.20224 0.92343 0.87707 0.96311 1.22011 0.96528 1.00048 0.98889 1.22510 0.98892 0.96236 0.90198 1.67500 1.04512 1.18539 1.31652 1.22461 0.91392 0.97708 0.96360 1.21887 1.01072 1.01089 0.94769 1.23039 0.98742 0.95596 1.06320 1.22601 0.92417 1.01164 1.02969 0.92734 0.85265 0.84156 0.84132 0.85731 0.89928 0.91516 0.91540 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.84 12.94 55.43 0.72 -23.12 15 2 C 0.07 1.97 5.39 -17.82 -0.10 1.87 15 3 Si 0.89 20.66 29.55 -169.99 -5.02 15.63 15 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 7 C -0.50 -13.12 8.77 -34.44 -0.30 -13.42 15 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 15 9 C 0.06 1.56 1.54 -156.81 -0.24 1.31 15 10 C 0.04 0.97 5.13 -104.32 -0.54 0.44 15 11 C -0.15 -3.34 9.31 -39.44 -0.37 -3.71 15 12 C 0.08 1.53 11.18 -17.55 -0.20 1.33 15 13 N -0.51 -10.31 10.36 -13.25 -0.14 -10.45 15 14 C 0.08 1.47 11.18 -17.55 -0.20 1.27 15 15 C -0.17 -3.49 9.79 -39.44 -0.39 -3.87 15 16 C -0.20 -4.22 9.94 -26.70 -0.27 -4.48 15 17 C -0.15 -3.48 9.00 -26.69 -0.24 -3.72 15 18 H 0.26 6.95 8.32 -40.82 -0.34 6.61 15 19 H 0.13 2.79 7.19 -52.49 -0.38 2.42 15 20 H 0.14 2.30 8.06 -52.48 -0.42 1.88 15 21 H 0.14 2.18 8.06 -52.48 -0.42 1.76 15 22 H 0.12 2.41 8.06 -52.48 -0.42 1.99 15 23 H 0.08 1.70 8.14 -51.92 -0.42 1.27 15 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.07 1.41 7.25 -51.93 -0.38 1.03 15 26 H 0.08 2.02 8.14 -51.93 -0.42 1.60 15 LS Contribution 234.59 15.07 3.54 3.54 Total: -1.00 -28.13 234.59 -6.57 -34.70 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -2.84 Total: 2.67 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.83 Total: -22.98 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.58 Total: -33.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.13 -6.57 -34.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921811.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.112 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds