Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86799 * 119.99859 * 2 1 4 4 H 1.48500 * 109.46785 * 239.99554 * 3 2 1 5 5 H 1.48499 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47575 * 119.99762 * 3 2 1 7 7 C 1.40255 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99880 * 197.75528 * 7 2 1 9 9 C 1.40019 * 119.99912 * 17.75771 * 7 2 1 10 10 C 1.40660 * 120.83944 * 24.42913 * 9 7 2 11 11 C 1.38319 * 121.11018 * 179.72067 * 10 9 7 12 12 C 1.37401 * 122.80466 * 0.53885 * 11 10 9 13 13 C 1.41040 * 120.60870 * 359.46254 * 12 11 10 14 14 N 1.31286 * 136.58946 * 180.25506 * 13 12 11 15 15 O 1.21172 * 111.62996 * 180.02562 * 14 13 12 16 16 C 1.34004 * 113.46974 * 0.02562 * 15 14 13 17 17 C 1.35735 * 106.45373 * 359.97438 * 16 15 14 18 18 H 0.97002 * 120.00051 * 0.02562 * 1 2 3 19 19 H 1.08002 * 119.44541 * 359.97438 * 10 9 7 20 20 H 1.07996 * 118.59626 * 180.28298 * 11 10 9 21 21 H 1.07999 * 119.69256 * 179.74367 * 12 11 10 22 22 H 1.08005 * 126.77359 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6966 1.2125 7 6 2.0080 -1.2146 0.0005 8 1 3.0493 -1.2368 0.2858 9 6 1.3579 -2.3985 -0.3688 10 6 0.2255 -2.3694 -1.2026 11 6 -0.4176 -3.5358 -1.5755 12 6 -0.0082 -4.7785 -1.1558 13 6 1.1171 -4.9186 -0.3172 14 7 1.7669 -5.9086 0.2495 15 8 2.7061 -5.5103 0.9033 16 6 2.8427 -4.1773 0.8839 17 6 1.8399 -3.6993 0.1040 18 1 -0.4850 0.8401 -0.0004 19 1 -0.1458 -1.4206 -1.5609 20 1 -1.2808 -3.4666 -2.2209 21 1 -0.5504 -5.6564 -1.4747 22 1 3.6012 -3.5977 1.3893 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260000591.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = 64.937667 kcal Electronic energy + Delta-G solvation = -10901.008180 eV Core-core repulsion = 8809.887512 eV Total energy + Delta-G solvation = -2091.120668 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.26804 -36.66245 -34.03909 -31.21517 -30.82258 -29.01707 -25.61177 -23.01643 -21.87681 -19.76325 -17.66802 -16.39592 -16.26587 -16.12893 -15.24384 -14.24433 -13.23279 -12.82907 -12.25251 -11.87788 -11.45278 -11.40516 -10.92964 -10.66627 -10.58780 -10.03463 -9.64610 -9.45716 -9.03699 -8.05543 -7.24641 -6.90440 -4.57513 1.74266 2.78891 2.85573 2.88157 3.08510 3.48074 3.60739 4.32356 4.36653 5.27917 5.37023 5.83339 6.26202 6.32559 6.49259 6.61686 6.83802 7.01837 7.29750 7.53631 7.67265 7.93599 8.02449 8.32255 8.48503 8.65295 9.57150 9.68699 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.052883 B = 0.013250 C = 0.010900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.344374 B = 2112.730082 C = 2568.172066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.069 3.931 3 Si 0.920 3.080 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.410 4.410 8 H 0.088 0.912 9 C 0.161 3.839 10 C -0.279 4.279 11 C -0.003 4.003 12 C -0.295 4.295 13 C 0.096 3.904 14 N -0.435 5.435 15 O 0.073 5.927 16 C -0.054 4.054 17 C -0.198 4.198 18 H 0.292 0.708 19 H 0.119 0.881 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 3.198 0.529 4.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.155 4.155 3 Si 0.742 3.258 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.436 4.436 8 H 0.106 0.894 9 C 0.156 3.844 10 C -0.300 4.300 11 C -0.025 4.025 12 C -0.319 4.319 13 C -0.050 4.050 14 N -0.155 5.155 15 O 0.020 5.980 16 C -0.139 4.139 17 C -0.201 4.201 18 H 0.103 0.897 19 H 0.137 0.863 20 H 0.110 0.890 21 H 0.111 0.889 22 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.780 1.979 0.597 3.464 hybrid contribution 0.108 1.605 -0.086 1.611 sum 2.887 3.584 0.511 4.631 Atomic orbital electron populations 1.69782 1.08087 1.30678 1.27972 1.26182 0.94927 1.02134 0.92280 0.86148 0.80197 0.78849 0.80563 1.18186 1.19742 1.18410 1.19671 0.98247 0.91198 1.34527 0.89385 1.17690 0.91287 0.87419 0.87967 1.20714 1.03639 0.96874 1.08789 1.20349 0.95652 0.92176 0.94339 1.19013 1.02522 0.96658 1.13677 1.21810 0.97470 0.87861 0.97867 1.73963 1.03604 1.21487 1.16397 1.84588 1.38524 1.21405 1.53525 1.25036 1.01458 0.84513 1.02908 1.21519 0.98412 0.96718 1.03463 0.89677 0.86282 0.89042 0.88889 0.77652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.39 10.96 55.56 0.61 -16.78 14 2 C 0.07 1.55 5.15 -17.29 -0.09 1.46 14 3 Si 0.92 16.30 29.60 -169.99 -5.03 11.27 14 4 H -0.26 -4.57 7.11 56.52 0.40 -4.16 14 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 14 7 C -0.41 -9.79 9.07 -38.16 -0.35 -10.14 14 8 H 0.09 1.92 7.91 -52.49 -0.42 1.51 14 9 C 0.16 4.15 5.71 -104.96 -0.60 3.55 14 10 C -0.28 -7.16 8.69 -38.64 -0.34 -7.50 14 11 C 0.00 -0.08 9.86 -39.86 -0.39 -0.48 14 12 C -0.30 -7.44 10.09 -38.82 -0.39 -7.83 14 13 C 0.10 2.50 7.60 -83.10 -0.63 1.87 14 14 N -0.44 -10.91 12.13 33.13 0.40 -10.51 14 15 O 0.07 1.63 11.08 17.20 0.19 1.82 14 16 C -0.05 -1.14 12.31 29.84 0.37 -0.78 14 17 C -0.20 -4.93 6.43 -103.50 -0.67 -5.60 14 18 H 0.29 6.06 8.29 -40.82 -0.34 5.73 14 19 H 0.12 3.06 6.13 -52.49 -0.32 2.74 14 20 H 0.09 1.93 8.06 -52.49 -0.42 1.51 14 21 H 0.09 2.18 8.06 -52.49 -0.42 1.76 14 22 H 0.21 3.31 8.06 -52.48 -0.42 2.88 14 LS Contribution 206.51 15.07 3.11 3.11 Total: -1.00 -28.06 206.51 -4.94 -33.00 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -1.14 Total: 3.53 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -3.09 Total: -25.45 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 1.01 Total: -27.29 kcal Atomic # 8 Polarization: 1.63 SS G_CDS: 0.19 Total: 1.82 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -28.06 -4.94 -33.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000591.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.941 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds