Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31553 * 119.62955 * 2 1 4 4 C 1.31855 * 122.15714 * 180.27860 * 3 2 1 5 5 C 1.39957 * 121.11455 * 359.97438 * 4 3 2 6 6 C 1.43198 * 120.44009 * 180.02562 * 5 4 3 7 7 N 4.75528 * 140.38370 * 0.39574 * 3 1 2 8 8 C 1.39464 * 119.11628 * 359.97438 * 5 4 3 9 9 C 1.40780 * 119.63172 * 180.26779 * 2 1 3 10 10 C 1.41448 * 120.59541 * 359.69997 * 9 2 1 11 11 H 1.08001 * 119.99600 * 334.92627 * 10 9 2 12 12 C 1.39939 * 120.00140 * 154.91924 * 10 9 2 13 13 N 1.30825 * 119.99877 * 344.14218 * 12 10 9 14 14 Si 1.86790 * 119.99971 * 164.13949 * 12 10 9 15 15 H 1.48506 * 109.47224 * 90.00311 * 14 12 10 16 16 H 1.48508 * 109.47123 * 209.99962 * 14 12 10 17 17 H 1.48505 * 109.47317 * 330.00152 * 14 12 10 18 18 H 1.08997 * 109.46923 * 269.72967 * 1 2 3 19 19 H 1.08999 * 109.46936 * 29.73156 * 1 2 3 20 20 H 1.09003 * 109.46808 * 149.72955 * 1 2 3 21 21 H 1.07998 * 119.44064 * 179.97438 * 4 3 2 22 22 H 1.08001 * 120.96793 * 180.02562 * 8 5 4 23 23 H 0.96996 * 120.00486 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1575 1.1435 0.0000 4 6 3.4747 1.2017 -0.0054 5 6 4.2501 0.0365 -0.0110 6 6 5.6798 0.1165 -0.0163 7 7 6.8140 0.1800 -0.0209 8 6 3.6117 -1.2034 -0.0102 9 6 2.2031 -1.2237 -0.0057 10 6 1.5008 -2.4515 -0.0051 11 1 0.4991 -2.5003 0.3958 12 6 2.1037 -3.6028 -0.5239 13 7 3.1664 -3.5005 -1.2801 14 14 1.3913 -5.2855 -0.1368 15 1 0.3868 -5.6473 -1.1691 16 1 2.4806 -6.2949 -0.1310 17 1 0.7400 -5.2524 1.1974 18 1 -0.3633 -0.0048 1.0276 19 1 -0.3633 0.8924 -0.5097 20 1 -0.3633 -0.8876 -0.5181 21 1 3.9635 2.1647 -0.0056 22 1 4.1806 -2.1214 -0.0139 23 1 3.5846 -4.2985 -1.6395 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260027112.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = 24.897975 kcal Electronic energy + Delta-G solvation = -10564.011030 eV Core-core repulsion = 8568.872773 eV Total energy + Delta-G solvation = -1995.138257 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.51760 -37.58808 -36.00187 -33.59860 -32.55902 -29.01958 -27.33195 -23.78375 -23.18666 -20.13903 -18.29050 -17.40124 -16.54576 -16.31435 -15.22688 -14.95712 -14.35319 -14.18161 -14.02436 -13.54367 -13.33726 -13.31695 -12.76665 -12.70869 -12.58597 -12.17132 -11.74033 -11.20599 -10.23245 -10.06966 -9.47864 -8.72312 -6.44721 0.10117 0.89077 1.45181 1.51917 1.59821 1.66339 2.11143 2.20682 2.76502 3.09983 3.59997 4.00502 4.44642 4.51358 4.84053 4.95856 5.07094 5.15934 5.24892 5.43609 5.58052 5.80576 5.89520 6.34699 6.52435 6.69088 6.74127 7.60007 8.22159 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.034813 B = 0.014839 C = 0.010713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.107278 B = 1886.478964 C = 2612.977100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.020 3.980 3 N -0.474 5.474 4 C 0.014 3.986 5 C -0.078 4.078 6 C 0.295 3.705 7 N -0.476 5.476 8 C -0.103 4.103 9 C 0.037 3.963 10 C -0.458 4.458 11 H 0.103 0.897 12 C 0.035 3.965 13 N -0.820 5.820 14 Si 0.984 3.016 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.252 1.252 18 H 0.071 0.929 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.157 0.843 22 H 0.121 0.879 23 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -1.370 1.648 5.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 N -0.182 5.182 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.019 4.019 7 N -0.153 5.153 8 C -0.131 4.131 9 C 0.032 3.968 10 C -0.487 4.487 11 H 0.121 0.879 12 C -0.181 4.181 13 N -0.445 5.445 14 Si 0.805 3.195 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.175 1.175 18 H 0.089 0.911 19 H 0.084 0.916 20 H 0.092 0.908 21 H 0.174 0.826 22 H 0.139 0.861 23 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.571 -0.626 1.494 3.921 hybrid contribution 0.306 -1.517 -0.094 1.550 sum -3.265 -2.143 1.401 4.149 Atomic orbital electron populations 1.20386 0.88133 1.02400 1.02123 1.21847 0.97490 0.87616 1.05258 1.66975 1.09342 1.29985 1.11892 1.22163 0.88935 0.95912 1.07618 1.16975 0.84135 0.96795 1.10541 1.25910 0.92708 0.91597 0.91652 1.81079 1.12505 1.09832 1.11859 1.21784 0.95309 0.94983 1.01032 1.18547 0.91799 0.94676 0.91747 1.19921 1.02583 0.91942 1.34267 0.87899 1.26862 0.94296 1.05362 0.91605 1.69798 1.18588 1.33787 1.22371 0.85138 0.78727 0.75296 0.80359 1.18454 1.19957 1.17511 0.91061 0.91552 0.90790 0.82564 0.86116 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.60 9.56 71.24 0.68 -1.92 14 2 C 0.02 0.89 6.86 43.22 0.30 1.18 14 3 N -0.47 -20.76 10.23 -180.73 -1.85 -22.61 14 4 C 0.01 0.58 10.91 85.11 0.93 1.51 14 5 C -0.08 -3.45 5.74 -21.32 -0.12 -3.57 14 6 C 0.30 12.54 15.36 88.33 1.36 13.90 14 7 N -0.48 -20.49 18.54 19.00 0.35 -20.13 14 8 C -0.10 -4.95 8.52 23.21 0.20 -4.75 14 9 C 0.04 1.76 5.58 -21.22 -0.12 1.64 14 10 C -0.46 -20.96 8.14 23.47 0.19 -20.76 14 11 H 0.10 4.31 6.86 -2.91 -0.02 4.29 14 12 C 0.04 1.56 5.20 85.25 0.44 2.00 14 13 N -0.82 -38.78 10.93 21.82 0.24 -38.54 14 14 Si 0.98 33.49 29.59 68.60 2.03 35.52 14 15 H -0.26 -8.53 7.11 99.48 0.71 -7.83 14 16 H -0.27 -9.27 7.11 99.48 0.71 -8.57 14 17 H -0.25 -8.27 7.11 99.48 0.71 -7.56 14 18 H 0.07 2.28 8.14 -2.39 -0.02 2.26 14 19 H 0.07 2.16 8.14 -2.39 -0.02 2.15 14 20 H 0.07 2.57 6.75 -2.39 -0.02 2.56 14 21 H 0.16 5.56 8.06 -2.91 -0.02 5.54 14 22 H 0.12 6.08 6.25 -2.91 -0.02 6.07 14 23 H 0.29 12.63 8.30 -92.71 -0.77 11.86 14 Total: -1.00 -51.64 218.96 5.86 -45.78 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.24 Total: 10.76 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.85 Total: -10.77 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -1.26 Total: -81.29 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.52 kcal Total: -51.64 5.86 -45.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027112.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.677 kcal (2) G-P(sol) polarization free energy of solvation -51.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds