Wall clock time and date at job start Mon Mar 30 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30608 * 1 3 3 Si 1.86802 * 120.00182 * 2 1 4 4 H 1.48496 * 109.46853 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46699 * 120.00030 * 3 2 1 6 6 H 1.48496 * 109.47120 * 240.00099 * 3 2 1 7 7 C 1.40395 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99914 * 3.89370 * 7 2 1 9 9 C 1.39871 * 119.99934 * 183.89980 * 7 2 1 10 10 O 1.35176 * 126.39122 * 6.18310 * 9 7 2 11 11 N 1.41506 * 108.03236 * 179.97438 * 10 9 7 12 12 C 1.30923 * 108.81199 * 0.02562 * 11 10 9 13 13 O 1.35763 * 125.76787 * 180.02562 * 12 11 10 14 14 C 1.39355 * 126.39152 * 185.88140 * 9 7 2 15 15 Cl 1.73604 * 126.25727 * 359.97438 * 14 9 7 16 16 H 0.97001 * 119.99986 * 174.83641 * 1 2 3 17 17 H 0.96701 * 113.99744 * 89.98082 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 1.2752 2.7464 0.0006 5 1 3.0939 1.6963 1.2126 6 1 3.0939 1.6964 -1.2125 7 6 2.0080 -1.2159 -0.0005 8 1 1.4698 -2.1501 -0.0645 9 6 3.4043 -1.2174 0.0818 10 8 4.1969 -0.1411 0.2833 11 7 5.5409 -0.5838 0.2998 12 6 5.5608 -1.8797 0.1147 13 8 6.6724 -2.6579 0.0697 14 6 4.2375 -2.3295 -0.0226 15 17 3.7322 -3.9705 -0.2787 16 1 -0.4850 -0.8366 -0.0756 17 1 6.9420 -3.0085 0.9295 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102982.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:53 Heat of formation + Delta-G solvation = -51.014438 kcal Electronic energy + Delta-G solvation = -9610.554212 eV Core-core repulsion = 7376.139539 eV Total energy + Delta-G solvation = -2234.414672 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 188.998 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.01762 -38.61018 -37.00415 -36.14363 -32.95454 -31.86627 -27.47124 -23.25878 -22.09415 -20.92746 -18.63036 -17.63741 -16.81832 -16.04276 -15.80813 -15.31023 -14.97446 -14.24480 -13.38915 -13.05191 -12.85187 -12.41687 -11.85453 -11.63125 -11.47643 -11.15343 -11.08547 -9.87783 -9.71208 -7.24849 0.47324 1.16551 1.31294 1.54707 1.72700 1.78633 2.04531 2.40902 2.72753 3.26775 4.16260 4.57379 5.03971 5.05677 5.62657 5.67205 6.05354 6.60062 6.66070 7.56892 Molecular weight = 189.00amu Principal moments of inertia in cm(-1) A = 0.049210 B = 0.017938 C = 0.013261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.853691 B = 1560.548036 C = 2110.942299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.026 3.974 3 Si 1.086 2.914 4 H -0.249 1.249 5 H -0.256 1.256 6 H -0.270 1.270 7 C -0.447 4.447 8 H 0.106 0.894 9 C 0.199 3.801 10 O -0.130 6.130 11 N -0.435 5.435 12 C 0.332 3.668 13 O -0.460 6.460 14 C -0.395 4.395 15 Cl -0.062 7.062 16 H 0.299 0.701 17 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -2.053 1.329 3.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.199 4.199 3 Si 0.907 3.093 4 H -0.174 1.174 5 H -0.182 1.182 6 H -0.196 1.196 7 C -0.476 4.476 8 H 0.123 0.877 9 C 0.141 3.859 10 O -0.132 6.132 11 N -0.211 5.211 12 C 0.129 3.871 13 O -0.270 6.270 14 C -0.434 4.434 15 Cl -0.034 7.034 16 H 0.111 0.889 17 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.408 0.531 0.984 3.586 hybrid contribution -0.393 -3.140 0.214 3.172 sum 3.015 -2.609 1.199 4.163 Atomic orbital electron populations 1.70498 1.07848 1.34286 1.26105 1.28354 0.95997 1.06346 0.89201 0.83218 0.74220 0.71308 0.80586 1.17397 1.18187 1.19552 1.20440 0.88050 0.98149 1.40930 0.87659 1.19971 0.92121 0.85180 0.88650 1.89028 1.14442 1.28514 1.81264 1.80336 0.90890 1.11049 1.38869 1.20280 0.85999 0.89110 0.91672 1.84675 1.40467 1.64695 1.37115 1.21433 0.90939 0.87480 1.43504 1.98153 1.91264 1.17222 1.96769 0.88862 0.71716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.93 13.64 21.91 0.30 -35.63 13 2 C 0.03 1.24 5.53 85.40 0.47 1.71 13 3 Si 1.09 45.69 25.98 68.60 1.78 47.47 13 4 H -0.25 -9.42 7.11 99.48 0.71 -8.72 13 5 H -0.26 -11.00 6.80 99.48 0.68 -10.32 13 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 13 7 C -0.45 -22.30 9.62 23.19 0.22 -22.08 13 8 H 0.11 5.29 7.94 -2.91 -0.02 5.26 13 9 C 0.20 10.11 6.59 22.93 0.15 10.26 13 10 O -0.13 -6.69 7.60 25.85 0.20 -6.49 13 11 N -0.43 -21.48 12.93 -170.84 -2.21 -23.68 13 12 C 0.33 15.05 8.43 85.36 0.72 15.77 13 13 O -0.46 -16.63 13.65 -90.89 -1.24 -17.87 13 14 C -0.39 -18.86 6.80 23.07 0.16 -18.70 13 15 Cl -0.06 -2.57 29.02 -2.72 -0.08 -2.65 13 16 H 0.30 13.40 8.72 -92.71 -0.81 12.59 13 17 H 0.42 10.17 9.06 -74.06 -0.67 9.50 13 Total: -1.00 -55.59 186.51 1.06 -54.53 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: 0.59 Total: -2.64 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 1.72 Total: -13.04 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -1.91 Total: -59.32 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.04 Total: -24.36 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.78 Total: 47.47 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.65 kcal Total: -55.59 1.06 -54.53 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102982.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.520 kcal (2) G-P(sol) polarization free energy of solvation -55.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds