Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09008 * 109.62991 * 60.68248 * 9 7 2 11 11 C 1.54272 * 109.63729 * 300.28083 * 9 7 2 12 12 C 1.45989 * 111.72968 * 162.27380 * 11 9 7 13 13 O 1.44225 * 112.10919 * 60.06232 * 12 11 9 14 14 C 1.39963 * 112.36855 * 277.41014 * 13 12 11 15 15 C 1.54348 * 112.56803 * 97.11810 * 14 13 12 16 16 C 1.50287 * 109.63584 * 181.28313 * 9 7 2 17 17 H 1.08999 * 108.78934 * 90.88629 * 16 9 7 18 18 F 1.39904 * 108.78538 * 332.68022 * 16 9 7 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.02558 * 282.84898 * 11 9 7 21 21 H 1.09000 * 109.02584 * 41.76802 * 11 9 7 22 22 H 1.09003 * 108.95156 * 180.74466 * 12 11 9 23 23 H 1.09009 * 108.95469 * 299.47542 * 12 11 9 24 24 H 1.08995 * 108.86140 * 217.91393 * 14 13 12 25 25 H 1.08996 * 108.86091 * 336.32792 * 14 13 12 26 26 H 1.09008 * 109.08400 * 79.82250 * 15 14 13 27 27 H 1.09002 * 109.08650 * 198.86949 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8815 -0.6886 0.8864 11 6 4.0247 -0.4649 -1.2649 12 6 5.4235 -0.0701 -1.1284 13 8 6.2897 -1.2042 -0.9193 14 6 6.3216 -1.6103 0.4197 15 6 5.3620 -2.7850 0.7054 16 6 4.0165 -2.6091 -0.0356 17 1 4.1451 -2.9142 -1.0740 18 9 3.0621 -3.4407 0.5602 19 1 -0.4850 0.8400 -0.0004 20 1 3.9247 -1.1274 -2.1246 21 1 3.4195 0.4263 -1.4308 22 1 5.7344 0.4507 -2.0341 23 1 5.5190 0.6079 -0.2801 24 1 7.3372 -1.9158 0.6713 25 1 6.0430 -0.7663 1.0507 26 1 5.8294 -3.7144 0.3797 27 1 5.1729 -2.8382 1.7776 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260146617.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = -96.922333 kcal Electronic energy + Delta-G solvation = -12461.856043 eV Core-core repulsion = 10134.206380 eV Total energy + Delta-G solvation = -2327.649663 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.57521 -38.93452 -34.46441 -32.10681 -31.72564 -27.44214 -25.21457 -22.91889 -21.11154 -19.32362 -17.15562 -16.32093 -15.73287 -15.11007 -14.94863 -14.18799 -13.69400 -13.58894 -12.86457 -12.52081 -12.16907 -11.85058 -11.58058 -11.05277 -10.63977 -10.42469 -10.26641 -9.98599 -9.61072 -9.37981 -9.18319 -8.92661 -8.58283 -6.08523 -4.07959 3.17822 3.27519 3.32636 4.18670 4.35152 4.99221 5.19304 5.29384 5.40514 5.48628 5.69906 5.78072 5.91850 5.98138 6.03432 6.17774 6.25681 6.44811 6.66017 6.75352 6.93687 7.29607 7.55347 7.70922 8.49151 9.02889 9.51497 11.04325 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.040866 B = 0.019203 C = 0.014320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.998925 B = 1457.748355 C = 1954.899812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.088 0.912 9 C -0.009 4.009 10 H 0.035 0.965 11 C -0.163 4.163 12 C 0.057 3.943 13 O -0.375 6.375 14 C 0.066 3.934 15 C -0.174 4.174 16 C 0.116 3.884 17 H 0.066 0.934 18 F -0.213 7.213 19 H 0.264 0.736 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.447 -0.249 -0.232 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.548 4.548 8 H 0.106 0.894 9 C -0.028 4.028 10 H 0.053 0.947 11 C -0.201 4.201 12 C -0.018 4.018 13 O -0.294 6.294 14 C -0.011 4.011 15 C -0.212 4.212 16 C 0.079 3.921 17 H 0.084 0.916 18 F -0.194 7.194 19 H 0.074 0.926 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.355 -0.250 -0.364 11.364 hybrid contribution 0.089 1.044 0.192 1.065 sum 11.444 0.794 -0.171 11.473 Atomic orbital electron populations 1.69893 1.06194 1.26852 1.50596 1.25025 0.94713 0.98789 0.94636 0.86978 0.80201 0.84012 0.77798 1.20390 1.22192 1.19083 1.21051 0.87926 0.95332 1.50540 0.89408 1.19455 0.98356 0.91299 0.93727 0.94686 1.21573 0.94561 1.02274 1.01698 1.21755 0.91481 0.87409 1.01182 1.87699 1.65494 1.49773 1.26426 1.22167 0.98264 0.96502 0.84215 1.23253 0.96582 0.99692 1.01677 1.21254 0.84035 0.91233 0.95547 0.91562 1.92749 1.66664 1.73880 1.86087 0.92615 0.91249 0.91180 0.90238 0.93357 0.90616 0.92947 0.91469 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.84 15 2 C 0.07 2.01 5.44 -17.82 -0.10 1.92 15 3 Si 0.88 21.32 24.44 -169.99 -4.16 17.17 15 4 H -0.28 -6.43 6.76 56.52 0.38 -6.04 15 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 6 H -0.27 -6.03 6.38 56.52 0.36 -5.67 15 7 C -0.51 -14.56 8.74 -34.44 -0.30 -14.86 15 8 H 0.09 2.78 6.86 -52.49 -0.36 2.42 15 9 C -0.01 -0.22 1.31 -92.46 -0.12 -0.34 15 10 H 0.04 0.83 6.20 -51.92 -0.32 0.51 15 11 C -0.16 -3.43 4.16 -29.39 -0.12 -3.55 15 12 C 0.06 1.01 6.12 33.83 0.21 1.22 15 13 O -0.38 -6.49 10.35 -32.83 -0.34 -6.83 15 14 C 0.07 1.03 6.09 37.86 0.23 1.26 15 15 C -0.17 -2.92 5.99 -25.18 -0.15 -3.07 15 16 C 0.12 2.45 3.28 -27.24 -0.09 2.36 15 17 H 0.07 1.37 7.34 -51.93 -0.38 0.99 15 18 F -0.21 -5.09 15.15 2.25 0.03 -5.06 15 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 20 H 0.07 1.42 7.53 -51.93 -0.39 1.03 15 21 H 0.07 1.56 3.46 -51.93 -0.18 1.39 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.05 0.83 7.17 -51.92 -0.37 0.46 15 24 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.05 0.81 6.54 -51.93 -0.34 0.47 15 26 H 0.07 1.01 8.14 -51.92 -0.42 0.58 15 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 LS Contribution 211.23 15.07 3.18 3.18 Total: -1.00 -30.56 211.23 -4.18 -34.74 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -3.23 Total: -1.30 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.44 Total: -15.07 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.77 Total: -26.84 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.34 Total: -6.83 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.03 Total: -5.06 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.16 Total: 17.17 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -30.56 -4.18 -34.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146617.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.180 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds