Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.69756 * 2 1 4 4 S 1.83959 * 110.78498 * 236.68562 * 2 1 3 5 5 C 1.83965 * 94.80264 * 207.04123 * 4 2 1 6 6 C 1.54255 * 102.58352 * 34.49799 * 5 4 2 7 7 C 1.52825 * 112.65986 * 335.48348 * 6 5 4 8 8 O 1.42895 * 108.96470 * 120.68919 * 7 6 5 9 9 C 1.50704 * 109.04811 * 239.20629 * 7 6 5 10 10 H 1.07999 * 119.99938 * 122.85769 * 9 7 6 11 11 C 1.37878 * 120.00155 * 302.85662 * 9 7 6 12 12 N 1.31513 * 120.00089 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00068 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46947 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46874 * 120.00242 * 13 11 9 16 16 H 1.48491 * 109.47347 * 240.00458 * 13 11 9 17 17 H 1.09009 * 109.47208 * 179.30199 * 1 2 3 18 18 H 1.09004 * 109.47338 * 299.29575 * 1 2 3 19 19 H 1.08993 * 109.47237 * 59.30039 * 1 2 3 20 20 H 1.09002 * 110.78487 * 152.77065 * 5 4 2 21 21 H 1.08999 * 110.78482 * 276.21914 * 5 4 2 22 22 H 1.09000 * 108.86874 * 96.28730 * 6 5 4 23 23 H 1.08994 * 108.86870 * 214.79752 * 6 5 4 24 24 H 0.96696 * 114.00152 * 57.19134 * 8 7 6 25 25 H 0.96993 * 120.00477 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0197 0.0000 4 16 2.1828 -0.9446 -1.4372 5 6 3.7640 -1.4019 -0.6156 6 6 3.3381 -1.5823 0.8560 7 6 2.0774 -0.7921 1.2051 8 8 1.0708 -1.7000 1.6573 9 6 2.3942 0.1723 2.3190 10 1 2.2240 1.2300 2.1822 11 6 2.9011 -0.2956 3.5128 12 7 3.1087 -1.5836 3.6793 13 14 3.2943 0.8999 4.8932 14 1 2.9737 2.2827 4.4567 15 1 2.4837 0.5584 6.0896 16 1 4.7375 0.8090 5.2307 17 1 -0.3634 -1.0277 -0.0125 18 1 -0.3634 0.5029 0.8962 19 1 -0.3633 0.5246 -0.8836 20 1 4.1555 -2.3345 -1.0221 21 1 4.4957 -0.5997 -0.7112 22 1 3.1530 -2.6401 1.0423 23 1 4.1504 -1.2482 1.5014 24 1 1.3377 -2.2374 2.4156 25 1 3.4650 -1.9128 4.5192 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260280203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -78.388261 kcal Electronic energy + Delta-G solvation = -10389.174038 eV Core-core repulsion = 8492.708154 eV Total energy + Delta-G solvation = -1896.465884 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.07879 -34.24434 -33.87456 -32.62852 -28.51664 -25.36923 -24.06482 -20.93716 -19.19896 -17.32025 -16.89010 -16.18354 -15.58475 -15.28840 -14.59938 -14.55894 -13.55247 -13.40296 -13.27138 -12.86838 -12.57255 -12.50247 -12.25035 -12.05054 -11.65577 -11.12692 -10.88057 -10.53967 -10.06254 -8.62007 -8.22878 -6.39909 1.08496 1.38604 1.42805 1.47427 1.53874 2.38546 3.02736 3.85348 4.00119 4.21664 4.27558 4.36777 4.56530 4.73767 4.96020 5.03856 5.11750 5.29568 5.52819 5.60653 5.81050 6.09414 6.65203 7.30845 7.44142 8.80887 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.054596 B = 0.015337 C = 0.014194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.733892 B = 1825.172802 C = 1972.151278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.006 4.006 3 H 0.090 0.910 4 S -0.352 6.352 5 C -0.051 4.051 6 C -0.113 4.113 7 C 0.240 3.760 8 O -0.587 6.587 9 C -0.557 4.557 10 H 0.056 0.944 11 C 0.031 3.969 12 N -0.910 5.910 13 Si 0.958 3.042 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.278 1.278 17 H 0.056 0.944 18 H 0.062 0.938 19 H 0.064 0.936 20 H 0.109 0.891 21 H 0.092 0.908 22 H 0.046 0.954 23 H 0.063 0.937 24 H 0.373 0.627 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 1.575 -3.626 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 H 0.109 0.891 4 S -0.126 6.126 5 C -0.199 4.199 6 C -0.153 4.153 7 C 0.199 3.801 8 O -0.395 6.395 9 C -0.597 4.597 10 H 0.074 0.926 11 C -0.169 4.169 12 N -0.550 5.550 13 Si 0.784 3.216 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.204 1.204 17 H 0.076 0.924 18 H 0.081 0.919 19 H 0.083 0.917 20 H 0.128 0.872 21 H 0.111 0.889 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.222 0.778 25 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.182 1.466 -5.139 5.347 hybrid contribution 1.123 0.371 2.481 2.748 sum 0.941 1.837 -2.658 3.366 Atomic orbital electron populations 1.21257 0.91427 1.02337 1.01251 1.23940 1.00054 0.98845 0.90561 0.89148 1.87336 1.25268 1.71619 1.28375 1.24164 0.94490 1.04685 0.96513 1.22536 1.00041 0.99860 0.92835 1.19375 0.83652 0.86409 0.90648 1.86165 1.44137 1.56542 1.52665 1.22047 1.43779 0.94194 0.99636 0.92601 1.25633 0.94051 0.96885 1.00366 1.69787 1.45189 1.13495 1.26519 0.85504 0.77762 0.79343 0.78989 1.19579 1.20679 1.20409 0.92449 0.91874 0.91749 0.87230 0.88924 0.93498 0.91824 0.77797 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.08 8.69 71.98 0.63 -3.45 15 2 C -0.01 -0.25 3.33 31.02 0.10 -0.15 15 3 H 0.09 3.82 7.67 -2.39 -0.02 3.80 15 4 S -0.35 -14.02 22.74 -56.49 -1.28 -15.31 15 5 C -0.05 -1.90 7.46 72.41 0.54 -1.36 15 6 C -0.11 -5.14 4.75 30.96 0.15 -4.99 15 7 C 0.24 11.55 0.84 -11.17 -0.01 11.54 15 8 O -0.59 -29.73 10.95 -148.98 -1.63 -31.36 15 9 C -0.56 -28.77 7.96 25.60 0.20 -28.56 15 10 H 0.06 2.89 7.51 -2.91 -0.02 2.86 15 11 C 0.03 1.59 4.86 84.66 0.41 2.01 15 12 N -0.91 -46.95 10.34 21.45 0.22 -46.73 15 13 Si 0.96 40.92 29.54 68.60 2.03 42.95 15 14 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 16 H -0.28 -11.64 7.11 99.48 0.71 -10.94 15 17 H 0.06 2.37 7.33 -2.38 -0.02 2.35 15 18 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 19 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.11 3.58 8.14 -2.39 -0.02 3.56 15 21 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 22 H 0.05 2.21 7.80 -2.39 -0.02 2.19 15 23 H 0.06 3.12 6.62 -2.39 -0.02 3.10 15 24 H 0.37 19.49 7.14 -74.06 -0.53 18.96 15 25 H 0.27 13.27 8.31 -92.71 -0.77 12.50 15 Total: -1.00 -53.22 217.72 2.00 -51.22 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.65 Total: 24.21 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 2.02 Total: -24.97 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.22 Total: -46.73 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.63 Total: -31.36 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: -14.02 SS G_CDS: -1.28 Total: -15.31 kcal Total: -53.22 2.00 -51.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.168 kcal (2) G-P(sol) polarization free energy of solvation -53.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds