Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.38753 * 2 1 4 4 S 1.83393 * 110.34020 * 122.23210 * 2 1 3 5 5 C 1.83542 * 95.81384 * 138.62894 * 4 2 1 6 6 C 1.55157 * 101.09987 * 324.60440 * 5 4 2 7 7 C 1.52936 * 108.81584 * 41.45033 * 6 5 4 8 8 O 1.42896 * 108.88866 * 209.19492 * 7 6 5 9 9 C 1.50698 * 108.89235 * 90.77668 * 7 6 5 10 10 H 1.07989 * 120.00551 * 241.76516 * 9 7 6 11 11 C 1.37886 * 119.99361 * 61.76130 * 9 7 6 12 12 N 1.31518 * 119.99654 * 188.77576 * 11 9 7 13 13 Si 1.86792 * 120.00247 * 8.77428 * 11 9 7 14 14 H 1.48504 * 109.46908 * 89.92952 * 13 11 9 15 15 H 1.48494 * 109.47417 * 209.92840 * 13 11 9 16 16 H 1.48503 * 109.47352 * 329.93277 * 13 11 9 17 17 H 1.08998 * 109.47406 * 182.22737 * 1 2 3 18 18 H 1.09001 * 109.47061 * 302.22694 * 1 2 3 19 19 H 1.08996 * 109.47361 * 62.22316 * 1 2 3 20 20 H 1.08995 * 110.95054 * 206.66743 * 5 4 2 21 21 H 1.08996 * 111.12363 * 82.61632 * 5 4 2 22 22 H 1.08995 * 109.60368 * 281.60186 * 6 5 4 23 23 H 1.09005 * 109.59916 * 161.28601 * 6 5 4 24 24 H 0.96698 * 113.99722 * 298.54254 * 8 7 6 25 25 H 0.96999 * 119.99686 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0216 0.0000 4 16 2.1675 -0.9171 1.4546 5 6 3.5169 -1.7769 0.5555 6 6 2.8493 -2.0201 -0.8239 7 6 2.0642 -0.7686 -1.2193 8 8 0.9616 -1.1549 -2.0420 9 6 2.9650 0.1419 -2.0134 10 1 3.1967 1.1295 -1.6430 11 6 3.4934 -0.2862 -3.2129 12 7 4.4116 0.4329 -3.8208 13 14 2.9053 -1.8872 -3.9743 14 1 1.7474 -1.6163 -4.8639 15 1 4.0062 -2.4929 -4.7655 16 1 2.4944 -2.8253 -2.8989 17 1 -0.3634 -1.0268 0.0399 18 1 -0.3633 0.5480 0.8694 19 1 -0.3634 0.4789 -0.9092 20 1 3.7701 -2.7193 1.0410 21 1 4.3947 -1.1379 0.4600 22 1 2.1716 -2.8711 -0.7572 23 1 3.6169 -2.2215 -1.5712 24 1 1.2195 -1.5866 -2.8680 25 1 4.7831 0.1319 -4.6648 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260280288.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -60.286413 kcal Electronic energy + Delta-G solvation = -10483.707753 eV Core-core repulsion = 8588.026824 eV Total energy + Delta-G solvation = -1895.680929 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.70820 -34.67500 -34.29171 -32.75950 -28.81629 -25.27852 -24.59266 -21.38893 -19.27876 -18.01743 -17.45105 -16.12766 -15.77735 -15.41132 -14.89579 -14.77483 -14.04564 -13.92185 -13.52074 -13.01776 -12.48764 -12.46243 -12.18973 -11.97238 -11.91872 -11.12486 -10.95197 -10.81702 -10.40172 -8.68373 -8.46166 -6.55935 0.97117 1.21080 1.23074 1.35263 1.38752 2.14078 2.81227 3.47059 3.74339 4.06937 4.13093 4.27767 4.45310 4.57026 4.73959 4.88288 4.91811 5.05555 5.18614 5.36143 5.42485 6.08673 6.49367 6.71339 7.10520 8.69884 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.049914 B = 0.018026 C = 0.016986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.833960 B = 1552.954829 C = 1648.039211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.010 4.010 3 H 0.079 0.921 4 S -0.321 6.321 5 C -0.049 4.049 6 C -0.147 4.147 7 C 0.213 3.787 8 O -0.569 6.569 9 C -0.552 4.552 10 H 0.039 0.961 11 C 0.024 3.976 12 N -0.927 5.927 13 Si 0.916 3.084 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.217 1.217 17 H 0.065 0.935 18 H 0.065 0.935 19 H 0.065 0.935 20 H 0.129 0.871 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.348 0.652 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 -6.717 5.062 9.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 H 0.098 0.902 4 S -0.094 6.094 5 C -0.196 4.196 6 C -0.186 4.186 7 C 0.172 3.828 8 O -0.381 6.381 9 C -0.590 4.590 10 H 0.057 0.943 11 C -0.176 4.176 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.141 1.141 17 H 0.084 0.916 18 H 0.084 0.916 19 H 0.084 0.916 20 H 0.147 0.853 21 H 0.102 0.898 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.200 0.800 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.857 -6.459 6.586 10.425 hybrid contribution 0.981 -0.205 -2.400 2.601 sum -3.877 -6.664 4.186 8.773 Atomic orbital electron populations 1.21392 0.90724 1.02843 1.01617 1.23571 1.00387 0.99280 0.90652 0.90223 1.87105 1.41497 1.59697 1.21133 1.24113 0.97034 1.02889 0.95591 1.23327 0.99725 0.98902 0.96643 1.19755 0.83359 0.90649 0.89026 1.86562 1.36423 1.81323 1.33765 1.21757 1.29109 1.01682 1.06465 0.94294 1.25898 0.93582 1.00921 0.97239 1.70050 1.27240 1.41313 1.17918 0.86616 0.78795 0.80509 0.80038 1.18695 1.21319 1.14084 0.91629 0.91611 0.91648 0.85334 0.89757 0.90353 0.90986 0.80010 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.85 8.30 71.98 0.60 -3.25 15 2 C -0.01 -0.43 3.52 30.83 0.11 -0.32 15 3 H 0.08 3.57 7.29 -2.39 -0.02 3.55 15 4 S -0.32 -11.86 22.65 -56.49 -1.28 -13.14 15 5 C -0.05 -1.70 7.49 72.72 0.54 -1.16 15 6 C -0.15 -5.83 3.77 31.31 0.12 -5.71 15 7 C 0.21 9.64 0.95 -11.32 -0.01 9.63 15 8 O -0.57 -25.35 10.80 -148.98 -1.61 -26.96 15 9 C -0.55 -30.17 8.72 25.60 0.22 -29.95 15 10 H 0.04 2.40 7.51 -2.92 -0.02 2.38 15 11 C 0.02 1.30 5.21 84.66 0.44 1.74 15 12 N -0.93 -54.84 13.96 21.45 0.30 -54.54 15 13 Si 0.92 39.09 23.03 68.60 1.58 40.67 15 14 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 15 H -0.29 -12.19 7.11 99.48 0.71 -11.49 15 16 H -0.22 -8.15 4.76 99.48 0.47 -7.67 15 17 H 0.06 2.30 7.95 -2.39 -0.02 2.28 15 18 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 19 H 0.06 2.42 7.73 -2.39 -0.02 2.40 15 20 H 0.13 3.56 8.14 -2.39 -0.02 3.54 15 21 H 0.08 3.11 8.14 -2.39 -0.02 3.09 15 22 H 0.08 2.85 7.94 -2.39 -0.02 2.83 15 23 H 0.07 2.96 4.99 -2.38 -0.01 2.95 15 24 H 0.35 14.78 3.27 -74.06 -0.24 14.54 15 25 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 Total: -1.00 -60.20 206.78 1.72 -58.48 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.71 Total: 24.52 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 2.02 Total: -29.03 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.30 Total: -54.54 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -1.61 Total: -26.96 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.58 Total: 40.67 kcal Atomic # 16 Polarization: -11.86 SS G_CDS: -1.28 Total: -13.14 kcal Total: -60.20 1.72 -58.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280288.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.808 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds