Wall clock time and date at job start Mon Mar 30 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30561 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47091 * 240.00489 * 3 2 1 5 5 H 1.48494 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46777 * 120.00618 * 3 2 1 7 7 C 1.40484 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00202 * 162.26677 * 7 2 1 9 9 C 1.39864 * 119.99601 * 342.27123 * 7 2 1 10 10 C 1.40559 * 120.83890 * 335.22654 * 9 7 2 11 11 C 1.38416 * 121.30930 * 180.02562 * 10 9 7 12 12 C 1.37461 * 122.74068 * 0.06345 * 11 10 9 13 13 C 1.40626 * 120.52222 * 359.91872 * 12 11 10 14 14 N 1.31161 * 138.53258 * 180.02562 * 13 12 11 15 15 O 1.21506 * 108.95353 * 180.02562 * 14 13 12 16 16 N 1.21493 * 116.23400 * 0.02562 * 15 14 13 17 17 C 1.30140 * 109.19887 * 0.02562 * 16 15 14 18 18 H 0.96994 * 119.99540 * 359.97438 * 1 2 3 19 19 H 1.08004 * 119.34203 * 0.02793 * 10 9 7 20 20 H 1.08000 * 118.63076 * 180.02562 * 11 10 9 21 21 H 1.08007 * 119.73660 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 3.0933 1.6964 -1.2125 5 1 1.2747 2.7464 0.0006 6 1 3.0935 1.6962 1.2124 7 6 2.0080 -1.2166 -0.0005 8 1 3.0495 -1.2388 -0.2854 9 6 1.3585 -2.3992 0.3678 10 6 0.2308 -2.3708 1.2063 11 6 -0.4192 -3.5352 1.5774 12 6 -0.0121 -4.7796 1.1588 13 6 1.1055 -4.9197 0.3168 14 7 1.7780 -5.8793 -0.2724 15 8 2.6930 -5.3895 -0.9043 16 7 2.7887 -4.1792 -0.8602 17 6 1.8387 -3.7018 -0.1097 18 1 -0.4849 0.8400 0.0004 19 1 -0.1358 -1.4216 1.5683 20 1 -1.2819 -3.4630 2.2231 21 1 -0.5553 -5.6566 1.4785 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382395.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:25 Heat of formation + Delta-G solvation = 100.831697 kcal Electronic energy + Delta-G solvation = -11048.182697 eV Core-core repulsion = 8893.192601 eV Total energy + Delta-G solvation = -2154.990097 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 190.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.01580 -38.79476 -36.14233 -35.12775 -33.37505 -31.86120 -27.83674 -25.66062 -24.96223 -21.82499 -19.89839 -19.43427 -18.62691 -18.35966 -17.17981 -16.00999 -15.00425 -14.86252 -13.90529 -13.67124 -13.49627 -12.93556 -12.92141 -12.55543 -12.33756 -12.15366 -12.05254 -11.58338 -11.25327 -10.28672 -9.31369 -9.05396 -6.61505 -0.36708 0.84755 1.17614 1.35871 1.51486 1.61396 2.07748 2.42673 2.72982 3.09665 3.24813 3.44237 4.21181 4.53031 4.68412 4.76522 4.94574 5.22046 5.46722 5.61770 5.88148 5.98843 6.28601 6.37926 6.55189 7.83620 8.01310 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.053492 B = 0.013348 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.320783 B = 2097.223073 C = 2546.149877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.251 1.251 6 H -0.252 1.252 7 C -0.393 4.393 8 H 0.094 0.906 9 C 0.127 3.873 10 C -0.281 4.281 11 C 0.008 3.992 12 C -0.308 4.308 13 C 0.064 3.936 14 N -0.441 5.441 15 O 0.308 5.692 16 N -0.361 5.361 17 C -0.041 4.041 18 H 0.313 0.687 19 H 0.129 0.871 20 H 0.138 0.862 21 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 4.795 1.725 5.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.193 4.193 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.175 1.175 6 H -0.176 1.176 7 C -0.419 4.419 8 H 0.112 0.888 9 C 0.122 3.878 10 C -0.303 4.303 11 C -0.014 4.014 12 C -0.333 4.333 13 C -0.083 4.083 14 N -0.183 5.183 15 O 0.095 5.905 16 N -0.084 5.084 17 C -0.198 4.198 18 H 0.125 0.875 19 H 0.146 0.854 20 H 0.155 0.845 21 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.677 4.229 1.010 4.401 hybrid contribution -0.377 0.690 0.296 0.840 sum 0.300 4.919 1.306 5.098 Atomic orbital electron populations 1.69676 1.09500 1.33464 1.24244 1.27202 0.95804 1.05104 0.91216 0.84939 0.78937 0.73565 0.80751 1.18141 1.17465 1.17608 1.20244 0.98759 0.91914 1.31004 0.88825 1.17927 0.92961 0.86220 0.90743 1.20850 1.03045 0.98226 1.08221 1.20765 0.96166 0.90784 0.93670 1.19233 1.02193 0.98400 1.13467 1.23052 0.99148 0.86993 0.99153 1.75012 1.05003 1.21733 1.16595 1.85132 1.38748 1.14529 1.52100 1.74419 1.21261 0.94040 1.18667 1.24832 0.94874 0.99679 1.00431 0.87468 0.85360 0.84461 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -32.18 10.97 21.92 0.24 -31.94 14 2 C 0.03 1.34 5.14 85.43 0.44 1.78 14 3 Si 1.00 30.90 29.60 68.60 2.03 32.93 14 4 H -0.26 -7.95 7.11 99.48 0.71 -7.24 14 5 H -0.25 -6.99 7.11 99.48 0.71 -6.28 14 6 H -0.25 -7.68 7.11 99.48 0.71 -6.97 14 7 C -0.39 -18.96 9.08 23.21 0.21 -18.75 14 8 H 0.09 4.42 7.91 -2.91 -0.02 4.40 14 9 C 0.13 6.58 5.71 -20.08 -0.11 6.47 14 10 C -0.28 -13.50 8.69 22.88 0.20 -13.30 14 11 C 0.01 0.33 9.87 22.13 0.22 0.55 14 12 C -0.31 -14.30 10.08 22.67 0.23 -14.08 14 13 C 0.06 3.29 7.75 42.54 0.33 3.62 14 14 N -0.44 -21.88 12.30 -57.63 -0.71 -22.59 14 15 O 0.31 14.84 11.67 139.27 1.63 16.47 14 16 N -0.36 -18.31 12.24 -56.14 -0.69 -19.00 14 17 C -0.04 -2.16 7.72 44.35 0.34 -1.82 14 18 H 0.31 11.51 8.29 -92.71 -0.77 10.74 14 19 H 0.13 6.02 6.15 -2.91 -0.02 6.01 14 20 H 0.14 4.86 8.06 -2.91 -0.02 4.84 14 21 H 0.12 5.04 8.06 -2.91 -0.02 5.01 14 Total: -1.00 -54.78 200.61 5.62 -49.16 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.26 Total: 10.50 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 1.85 Total: -35.53 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.16 Total: -73.53 kcal Atomic # 8 Polarization: 14.84 SS G_CDS: 1.63 Total: 16.47 kcal Atomic # 14 Polarization: 30.90 SS G_CDS: 2.03 Total: 32.93 kcal Total: -54.78 5.62 -49.16 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382395.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.995 kcal (2) G-P(sol) polarization free energy of solvation -54.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds