Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37977 * 119.41861 * 2 1 4 4 C 1.41044 * 119.09152 * 179.72856 * 3 2 1 5 5 C 1.41496 * 120.99332 * 180.25420 * 4 3 2 6 6 H 1.08000 * 120.00342 * 203.51040 * 5 4 3 7 7 C 1.40066 * 120.00175 * 23.50612 * 5 4 3 8 8 N 1.30723 * 119.99710 * 17.07290 * 7 5 4 9 9 Si 1.86801 * 120.00233 * 197.07763 * 7 5 4 10 10 H 1.48496 * 109.46971 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47038 * 119.99956 * 9 7 5 12 12 H 1.48502 * 109.46763 * 239.99795 * 9 7 5 13 13 C 1.40974 * 118.01969 * 0.48662 * 4 3 2 14 14 C 1.38970 * 118.75041 * 359.51908 * 13 4 3 15 15 C 1.43200 * 119.62377 * 180.26896 * 14 13 4 16 16 N 4.70117 * 131.80595 * 179.97438 * 2 1 3 17 17 N 1.31731 * 119.40936 * 179.97438 * 2 1 3 18 18 H 1.08995 * 109.46810 * 270.02068 * 1 2 3 19 19 H 1.09008 * 109.47059 * 30.01912 * 1 2 3 20 20 H 1.08996 * 109.47586 * 150.01982 * 1 2 3 21 21 H 1.08004 * 120.45266 * 359.97438 * 3 2 1 22 22 H 0.97008 * 120.00138 * 180.02562 * 8 7 5 23 23 H 1.07998 * 120.62296 * 179.78131 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1847 1.2019 0.0000 4 6 3.5951 1.1938 0.0058 5 6 4.3306 2.4026 0.0114 6 1 5.3455 2.4189 -0.3574 7 6 3.7424 3.5781 0.4953 8 7 2.6680 3.5139 1.2371 9 14 4.4933 5.2375 0.0805 10 1 5.6964 5.0385 -0.7669 11 1 3.4997 6.0604 -0.6550 12 1 4.8808 5.9327 1.3342 13 6 4.2503 -0.0544 0.0009 14 6 3.4821 -1.2125 0.0008 15 6 4.1283 -2.4905 0.0016 16 7 4.6408 -3.5043 0.0016 17 7 2.1538 -1.1476 0.0005 18 1 -0.3633 0.0004 1.0276 19 1 -0.3633 0.8899 -0.5142 20 1 -0.3634 -0.8901 -0.5135 21 1 1.6426 2.1360 -0.0004 22 1 2.2603 4.3280 1.5719 23 1 5.3289 -0.1096 0.0015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260397666.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = 26.935542 kcal Electronic energy + Delta-G solvation = -10451.723505 eV Core-core repulsion = 8456.673603 eV Total energy + Delta-G solvation = -1995.049901 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53460 -37.56862 -36.09021 -33.57282 -32.55735 -28.50637 -27.72082 -24.99505 -22.38153 -20.17614 -18.40463 -17.13526 -16.59472 -16.10377 -15.45588 -15.05393 -14.38762 -14.25294 -13.94699 -13.76740 -13.29031 -13.12637 -12.83306 -12.75325 -12.68658 -12.00000 -11.83787 -11.26591 -10.12040 -10.05816 -9.46780 -8.74826 -6.60284 0.16303 0.83329 1.44982 1.50789 1.55840 1.60198 2.05855 2.20958 2.77567 2.81862 3.59280 4.05889 4.54032 4.69113 4.83084 4.96071 5.01034 5.13685 5.20763 5.23499 5.50525 5.83987 6.00527 6.38761 6.43536 6.69370 6.74942 7.46135 8.20787 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.044794 B = 0.011916 C = 0.009667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.927452 B = 2349.227689 C = 2895.904903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.115 3.885 3 C -0.209 4.209 4 C 0.098 3.902 5 C -0.472 4.472 6 H 0.090 0.910 7 C 0.042 3.958 8 N -0.802 5.802 9 Si 0.987 3.013 10 H -0.257 1.257 11 H -0.261 1.261 12 H -0.267 1.267 13 C -0.224 4.224 14 C 0.174 3.826 15 C 0.304 3.696 16 N -0.452 5.452 17 N -0.559 5.559 18 H 0.076 0.924 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.129 0.871 22 H 0.297 0.703 23 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 4.496 -1.480 5.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 C -0.232 4.232 4 C 0.090 3.910 5 C -0.502 4.502 6 H 0.108 0.892 7 C -0.178 4.178 8 N -0.427 5.427 9 Si 0.807 3.193 10 H -0.181 1.181 11 H -0.186 1.186 12 H -0.191 1.191 13 C -0.251 4.251 14 C 0.040 3.960 15 C -0.012 4.012 16 N -0.130 5.130 17 N -0.277 5.277 18 H 0.094 0.906 19 H 0.099 0.901 20 H 0.092 0.908 21 H 0.147 0.853 22 H 0.108 0.892 23 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.831 2.272 -1.337 3.210 hybrid contribution 0.625 1.704 0.068 1.817 sum -1.206 3.976 -1.269 4.344 Atomic orbital electron populations 1.20575 0.87615 1.03102 1.02891 1.21208 0.97382 0.87624 0.95732 1.22273 0.94823 0.98113 1.07996 1.18093 0.92889 0.92526 0.87466 1.19968 1.01119 0.92552 1.36560 0.89198 1.26817 0.94590 1.04914 0.91432 1.69760 1.18056 1.33082 1.21755 0.85068 0.79436 0.75573 0.79220 1.18058 1.18592 1.19147 1.21950 0.99601 0.91543 1.11994 1.16090 0.90151 0.85728 1.04069 1.25483 0.91810 0.91767 0.92122 1.81070 1.10742 1.10705 1.10499 1.67137 1.07262 1.30449 1.22812 0.90581 0.90071 0.90813 0.85313 0.89190 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 10.16 71.23 0.72 -2.08 14 2 C 0.11 4.99 6.77 42.51 0.29 5.28 14 3 C -0.21 -9.85 8.42 22.90 0.19 -9.65 14 4 C 0.10 4.78 5.61 -21.12 -0.12 4.67 14 5 C -0.47 -22.40 9.12 23.52 0.21 -22.19 14 6 H 0.09 4.07 7.90 -2.91 -0.02 4.04 14 7 C 0.04 1.82 5.20 85.30 0.44 2.27 14 8 N -0.80 -36.43 10.91 21.84 0.24 -36.20 14 9 Si 0.99 33.19 29.59 68.60 2.03 35.22 14 10 H -0.26 -8.56 7.11 99.48 0.71 -7.85 14 11 H -0.26 -8.44 7.11 99.48 0.71 -7.73 14 12 H -0.27 -8.71 7.11 99.48 0.71 -8.00 14 13 C -0.22 -10.26 9.58 23.12 0.22 -10.04 14 14 C 0.17 7.88 6.58 40.39 0.27 8.15 14 15 C 0.30 12.94 15.52 88.33 1.37 14.31 14 16 N -0.45 -19.11 18.54 19.00 0.35 -18.76 14 17 N -0.56 -25.56 10.16 -177.86 -1.81 -27.37 14 18 H 0.08 2.35 8.14 -2.39 -0.02 2.33 14 19 H 0.08 2.39 8.07 -2.38 -0.02 2.38 14 20 H 0.07 2.26 8.14 -2.39 -0.02 2.24 14 21 H 0.13 6.09 6.18 -2.91 -0.02 6.07 14 22 H 0.30 11.97 8.29 -92.70 -0.77 11.20 14 23 H 0.12 5.20 8.06 -2.91 -0.02 5.18 14 Total: -1.00 -52.19 222.25 5.65 -46.54 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.23 Total: 9.85 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.60 Total: -9.29 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.22 Total: -82.32 kcal Atomic # 14 Polarization: 33.19 SS G_CDS: 2.03 Total: 35.22 kcal Total: -52.19 5.65 -46.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260397666.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.479 kcal (2) G-P(sol) polarization free energy of solvation -52.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds