Wall clock time and date at job start Mon Mar 30 2020 02:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86793 * 119.99697 * 2 1 4 4 H 1.48500 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48503 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47517 * 119.99549 * 3 2 1 7 7 C 1.39877 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99860 * 162.95658 * 7 2 1 9 9 C 1.41407 * 120.00710 * 342.95768 * 7 2 1 10 10 C 1.41030 * 120.61775 * 155.82682 * 9 7 2 11 11 N 1.31158 * 121.23806 * 179.97438 * 10 9 7 12 12 C 1.32836 * 122.08097 * 0.02562 * 11 10 9 13 13 O 1.34771 * 132.85008 * 179.97438 * 12 11 10 14 14 C 1.34451 * 111.07952 * 180.02562 * 13 12 11 15 15 C 1.33918 * 110.25346 * 359.97438 * 14 13 12 16 16 C 1.40954 * 120.18500 * 359.97438 * 12 11 10 17 17 C 1.38939 * 119.91295 * 0.02562 * 16 12 11 18 18 H 0.96993 * 120.00488 * 0.02562 * 1 2 3 19 19 H 1.07996 * 119.38157 * 359.95694 * 10 9 7 20 20 H 1.08002 * 124.87206 * 180.02562 * 14 13 12 21 21 H 1.08001 * 126.96411 * 179.97438 * 15 14 13 22 22 H 1.07997 * 121.09064 * 180.02562 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6966 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0527 -1.2320 -0.2736 9 6 1.3479 -2.4090 0.3600 10 6 1.8242 -3.6562 -0.0947 11 7 1.2216 -4.7745 0.2316 12 6 0.1388 -4.7940 1.0009 13 8 -0.6395 -5.7926 1.4628 14 6 -1.6418 -5.3136 2.2202 15 6 -1.5705 -3.9783 2.2932 16 6 -0.4003 -3.5895 1.4963 17 6 0.2020 -2.3784 1.1788 18 1 -0.4850 0.8399 -0.0004 19 1 2.7015 -3.6910 -0.7235 20 1 -2.3957 -5.9190 2.7015 21 1 -2.2388 -3.3206 2.8291 22 1 -0.1948 -1.4444 1.5483 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260589697.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:32 Heat of formation + Delta-G solvation = 10.271894 kcal Electronic energy + Delta-G solvation = -10832.600199 eV Core-core repulsion = 8739.109045 eV Total energy + Delta-G solvation = -2093.491153 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.93727 -39.28619 -35.87598 -33.79497 -31.99615 -30.23724 -27.47275 -24.51397 -23.09938 -21.90583 -19.51068 -18.41541 -17.89862 -16.97538 -16.75752 -16.06664 -15.01304 -14.28161 -13.92007 -13.73634 -13.58156 -13.45649 -13.05250 -12.79153 -12.30396 -11.87227 -11.36462 -11.07911 -10.11664 -9.54664 -9.17438 -8.71036 -6.43864 0.32307 0.73535 1.41209 1.51741 1.55224 1.74907 1.86128 2.19388 2.64309 3.53887 3.88833 3.99754 4.42174 4.52951 4.67980 4.81166 5.06843 5.17329 5.39797 5.67220 5.75240 5.82807 6.24246 6.49976 6.69315 6.72569 7.34770 8.24347 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.071319 B = 0.011451 C = 0.010114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.509480 B = 2444.508653 C = 2767.818105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.474 4.474 8 H 0.096 0.904 9 C 0.024 3.976 10 C 0.033 3.967 11 N -0.479 5.479 12 C 0.098 3.902 13 O -0.215 6.215 14 C 0.024 3.976 15 C -0.243 4.243 16 C -0.158 4.158 17 C -0.141 4.141 18 H 0.293 0.707 19 H 0.167 0.833 20 H 0.263 0.737 21 H 0.172 0.828 22 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 0.114 3.415 3.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.503 4.503 8 H 0.114 0.886 9 C 0.020 3.980 10 C -0.133 4.133 11 N -0.195 5.195 12 C -0.075 4.075 13 O -0.116 6.116 14 C -0.041 4.041 15 C -0.263 4.263 16 C -0.161 4.161 17 C -0.167 4.167 18 H 0.103 0.897 19 H 0.184 0.816 20 H 0.278 0.722 21 H 0.189 0.811 22 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.840 -0.856 3.071 3.681 hybrid contribution -0.186 1.570 0.203 1.594 sum -2.026 0.715 3.274 3.916 Atomic orbital electron populations 1.69867 1.09344 1.31231 1.34231 1.26903 0.95505 1.04979 0.90901 0.85092 0.78605 0.74755 0.80365 1.17823 1.19402 1.18308 1.19793 0.98645 0.91207 1.40681 0.88575 1.18763 0.93270 0.94610 0.91370 1.22897 1.01576 0.86101 1.02697 1.65714 1.07155 1.33403 1.13239 1.19463 0.96896 0.84917 1.06233 1.83704 1.35866 1.34487 1.57558 1.24797 0.90672 0.94634 0.93947 1.22673 1.00092 0.96569 1.06917 1.20956 0.98630 0.94928 1.01629 1.21072 0.99410 0.95264 1.00997 0.89663 0.81594 0.72162 0.81079 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.63 10.93 21.82 0.24 -41.39 14 2 C 0.03 1.59 5.18 85.23 0.44 2.03 14 3 Si 0.99 35.90 29.59 68.60 2.03 37.93 14 4 H -0.25 -8.80 7.11 99.48 0.71 -8.09 14 5 H -0.27 -9.32 7.11 99.48 0.71 -8.61 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 7 C -0.47 -24.29 9.08 23.45 0.21 -24.07 14 8 H 0.10 4.53 7.90 -2.91 -0.02 4.51 14 9 C 0.02 1.32 5.59 -21.17 -0.12 1.20 14 10 C 0.03 1.67 10.93 85.48 0.93 2.61 14 11 N -0.48 -25.46 10.35 -305.88 -3.17 -28.63 14 12 C 0.10 5.08 8.58 85.21 0.73 5.81 14 13 O -0.22 -9.50 10.57 -8.56 -0.09 -9.59 14 14 C 0.02 0.80 11.95 66.84 0.80 1.60 14 15 C -0.24 -9.44 11.15 23.53 0.26 -9.18 14 16 C -0.16 -8.03 6.39 -20.20 -0.13 -8.16 14 17 C -0.14 -7.66 8.85 23.08 0.20 -7.45 14 18 H 0.29 13.33 8.30 -92.71 -0.77 12.56 14 19 H 0.17 7.44 8.06 -2.91 -0.02 7.42 14 20 H 0.26 4.83 8.06 -2.91 -0.02 4.80 14 21 H 0.17 5.49 8.06 -2.91 -0.02 5.47 14 22 H 0.12 6.65 6.23 -2.91 -0.02 6.63 14 Total: -1.00 -64.66 207.07 3.59 -61.07 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.24 Total: 16.22 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 3.34 Total: -35.62 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -2.93 Total: -70.02 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.09 Total: -9.59 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -64.66 3.59 -61.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260589697.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.343 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds