Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29664 * 1 3 3 Si 1.86797 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47405 * 300.00102 * 3 2 1 6 6 H 1.48503 * 109.47368 * 59.99904 * 3 2 1 7 7 C 1.46274 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99773 * 192.68072 * 7 2 1 9 9 C 1.40447 * 120.00293 * 12.67392 * 7 2 1 10 10 C 1.41688 * 120.16329 * 205.16040 * 9 7 2 11 11 C 1.37729 * 120.15492 * 180.02562 * 10 9 7 12 12 C 1.38267 * 120.50538 * 0.04387 * 11 10 9 13 13 C 1.41208 * 120.31797 * 359.95366 * 12 11 10 14 14 N 1.34261 * 120.08334 * 179.97438 * 13 12 11 15 15 C 1.25000 * 120.00287 * 0.03069 * 14 13 12 16 16 O 7.49473 * 57.00741 * 203.03771 * 2 1 3 17 17 C 1.39634 * 119.83568 * 0.02599 * 13 12 11 18 18 H 0.97002 * 120.00134 * 0.02562 * 1 2 3 19 19 H 1.07999 * 119.92152 * 0.02562 * 10 9 7 20 20 H 1.08009 * 119.75065 * 180.02562 * 11 10 9 21 21 H 1.07993 * 119.84531 * 179.97438 * 12 11 10 22 22 H 1.08000 * 120.24573 * 179.72115 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2966 0.0000 0.0000 3 14 2.2306 1.6177 0.0000 4 1 3.6906 1.3465 0.0006 5 1 1.8718 2.3965 -1.2125 6 1 1.8718 2.3965 1.2125 7 6 2.0280 -1.2668 -0.0006 8 1 3.0883 -1.2782 0.2048 9 6 1.3515 -2.4682 -0.2680 10 6 1.8583 -3.6957 0.2260 11 6 1.1950 -4.8738 -0.0368 12 6 0.0315 -4.8727 -0.7838 13 6 -0.4919 -3.6612 -1.2862 14 7 -1.6217 -3.6657 -2.0114 15 6 -2.2121 -4.7430 -2.2423 16 8 -2.7845 -5.7848 -2.4600 17 6 0.1692 -2.4587 -1.0277 18 1 -0.4850 0.8400 -0.0004 19 1 2.7667 -3.7075 0.8099 20 1 1.5869 -5.8058 0.3434 21 1 -0.4797 -5.8027 -0.9837 22 1 -0.2228 -1.5289 -1.4125 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260601747.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = 9.828129 kcal Electronic energy + Delta-G solvation = -10490.481834 eV Core-core repulsion = 8396.971438 eV Total energy + Delta-G solvation = -2093.510396 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.03271 -37.80801 -35.37183 -33.45757 -29.83607 -28.56732 -25.10611 -22.19887 -21.04573 -19.04763 -17.68088 -16.17974 -15.51200 -15.16586 -15.01935 -14.66384 -13.45368 -12.97818 -12.68787 -12.06786 -11.56103 -11.25110 -11.00280 -10.76624 -10.46783 -9.96674 -9.87907 -9.49101 -9.27649 -7.65092 -7.09177 -6.84912 -4.48223 1.75495 1.88678 2.70888 2.96781 3.01628 3.08729 3.54605 3.76159 3.85479 4.44154 5.52815 6.03867 6.19860 6.48192 6.73288 6.76250 6.96912 7.13690 7.46050 7.64932 7.77003 7.92065 8.01082 8.34020 8.64806 8.79798 8.83862 9.88644 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.056060 B = 0.010643 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.347451 B = 2630.124968 C = 3068.026315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.460 4.460 8 H 0.086 0.914 9 C 0.117 3.883 10 C -0.239 4.239 11 C -0.066 4.066 12 C -0.307 4.307 13 C 0.131 3.869 14 N -0.469 5.469 15 C 0.605 3.395 16 O -0.386 6.386 17 C -0.146 4.146 18 H 0.289 0.711 19 H 0.096 0.904 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -0.140 -0.871 1.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.154 4.154 3 Si 0.743 3.257 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.258 4.258 11 C -0.085 4.085 12 C -0.328 4.328 13 C 0.037 3.963 14 N -0.211 5.211 15 C 0.304 3.696 16 O -0.245 6.245 17 C -0.167 4.167 18 H 0.102 0.898 19 H 0.114 0.886 20 H 0.111 0.889 21 H 0.106 0.894 22 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.008 0.132 -1.137 1.144 hybrid contribution 0.151 0.133 0.124 0.236 sum 0.159 0.265 -1.012 1.058 Atomic orbital electron populations 1.69191 1.08632 1.30427 1.29866 1.27476 0.94576 1.02023 0.91306 0.86075 0.81158 0.79654 0.78821 1.17906 1.19402 1.19671 1.20724 0.96212 0.89300 1.42466 0.89602 1.17412 0.90755 0.92371 0.88078 1.21172 1.03376 0.92797 1.08502 1.20264 0.94511 0.96664 0.97020 1.21114 1.03357 0.93950 1.14392 1.17408 0.86836 0.95507 0.96557 1.63701 1.16604 1.09479 1.31344 1.26614 0.82009 0.78163 0.82770 1.90932 1.52539 1.13708 1.67295 1.21324 0.98126 0.94695 1.02533 0.89846 0.88606 0.88918 0.89409 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.45 10.85 55.97 0.61 -17.84 14 2 C 0.07 1.67 5.39 -15.24 -0.08 1.59 14 3 Si 0.92 17.33 29.66 -169.99 -5.04 12.29 14 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 14 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 14 7 C -0.46 -11.54 9.31 -35.52 -0.33 -11.87 14 8 H 0.09 2.05 7.96 -52.48 -0.42 1.64 14 9 C 0.12 3.01 5.61 -106.88 -0.60 2.41 14 10 C -0.24 -5.68 9.82 -38.45 -0.38 -6.06 14 11 C -0.07 -1.46 10.00 -39.76 -0.40 -1.86 14 12 C -0.31 -6.97 9.29 -38.44 -0.36 -7.33 14 13 C 0.13 3.13 6.51 -85.16 -0.55 2.58 14 14 N -0.47 -10.13 10.16 16.08 0.16 -9.96 14 15 C 0.60 11.61 14.93 49.98 0.75 12.36 14 16 O -0.39 -7.27 18.00 5.93 0.11 -7.17 14 17 C -0.15 -3.76 8.70 -38.19 -0.33 -4.09 14 18 H 0.29 6.27 8.27 -40.82 -0.34 5.93 14 19 H 0.10 2.11 8.06 -52.49 -0.42 1.69 14 20 H 0.09 1.77 8.06 -52.48 -0.42 1.35 14 21 H 0.09 1.84 7.01 -52.49 -0.37 1.47 14 22 H 0.13 3.54 6.04 -52.49 -0.32 3.22 14 LS Contribution 214.96 15.07 3.24 3.24 Total: -1.00 -25.71 214.96 -4.29 -30.00 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -1.08 Total: 1.72 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.29 Total: -12.27 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: 0.77 Total: -27.81 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.17 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.04 Total: 12.29 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -25.71 -4.29 -30.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260601747.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.829 kcal (2) G-P(sol) polarization free energy of solvation -25.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds