Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29664 * 1 3 3 Si 1.86797 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47405 * 300.00102 * 3 2 1 6 6 H 1.48503 * 109.47368 * 59.99904 * 3 2 1 7 7 C 1.46274 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99773 * 192.68072 * 7 2 1 9 9 C 1.40447 * 120.00293 * 12.67392 * 7 2 1 10 10 C 1.41688 * 120.16329 * 205.16040 * 9 7 2 11 11 C 1.37729 * 120.15492 * 180.02562 * 10 9 7 12 12 C 1.38267 * 120.50538 * 0.04387 * 11 10 9 13 13 C 1.41208 * 120.31797 * 359.95366 * 12 11 10 14 14 N 1.34261 * 120.08334 * 179.97438 * 13 12 11 15 15 C 1.25000 * 120.00287 * 0.03069 * 14 13 12 16 16 O 7.49473 * 57.00741 * 203.03771 * 2 1 3 17 17 C 1.39634 * 119.83568 * 0.02599 * 13 12 11 18 18 H 0.97002 * 120.00134 * 0.02562 * 1 2 3 19 19 H 1.07999 * 119.92152 * 0.02562 * 10 9 7 20 20 H 1.08009 * 119.75065 * 180.02562 * 11 10 9 21 21 H 1.07993 * 119.84531 * 179.97438 * 12 11 10 22 22 H 1.08000 * 120.24573 * 179.72115 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2966 0.0000 0.0000 3 14 2.2306 1.6177 0.0000 4 1 3.6906 1.3465 0.0006 5 1 1.8718 2.3965 -1.2125 6 1 1.8718 2.3965 1.2125 7 6 2.0280 -1.2668 -0.0006 8 1 3.0883 -1.2782 0.2048 9 6 1.3515 -2.4682 -0.2680 10 6 1.8583 -3.6957 0.2260 11 6 1.1950 -4.8738 -0.0368 12 6 0.0315 -4.8727 -0.7838 13 6 -0.4919 -3.6612 -1.2862 14 7 -1.6217 -3.6657 -2.0114 15 6 -2.2121 -4.7430 -2.2423 16 8 -2.7845 -5.7848 -2.4600 17 6 0.1692 -2.4587 -1.0277 18 1 -0.4850 0.8400 -0.0004 19 1 2.7667 -3.7075 0.8099 20 1 1.5869 -5.8058 0.3434 21 1 -0.4797 -5.8027 -0.9837 22 1 -0.2228 -1.5289 -1.4125 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260601747.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = -5.537710 kcal Electronic energy + Delta-G solvation = -10491.148147 eV Core-core repulsion = 8396.971438 eV Total energy + Delta-G solvation = -2094.176709 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.72828 -39.51709 -37.12505 -35.24110 -31.65407 -30.36368 -26.93415 -23.94025 -22.86328 -20.76672 -19.41548 -17.96130 -17.14308 -16.88801 -16.66286 -16.42850 -15.15470 -14.72118 -14.36706 -13.84406 -13.23852 -12.83012 -12.78108 -12.44099 -12.11853 -11.69543 -11.63750 -11.22313 -11.02473 -9.50192 -8.86391 -8.62709 -6.36652 0.12200 0.17379 1.00664 1.41979 1.48136 1.57422 1.83612 2.18132 2.20117 2.66906 3.66917 4.33824 4.42954 4.71744 4.94695 4.99093 5.16905 5.30124 5.66094 5.80220 5.94831 6.07080 6.20714 6.53147 6.79521 6.97520 7.12390 8.16429 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.056060 B = 0.010643 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.347451 B = 2630.124968 C = 3068.026315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.033 3.967 3 Si 0.995 3.005 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.494 4.494 8 H 0.088 0.912 9 C 0.092 3.908 10 C -0.255 4.255 11 C -0.062 4.062 12 C -0.313 4.313 13 C 0.134 3.866 14 N -0.489 5.489 15 C 0.635 3.365 16 O -0.372 6.372 17 C -0.180 4.180 18 H 0.299 0.701 19 H 0.107 0.893 20 H 0.128 0.872 21 H 0.109 0.891 22 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -0.493 -0.831 1.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.189 4.189 3 Si 0.814 3.186 4 H -0.176 1.176 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.106 0.894 9 C 0.089 3.911 10 C -0.275 4.275 11 C -0.081 4.081 12 C -0.334 4.334 13 C 0.039 3.961 14 N -0.233 5.233 15 C 0.335 3.665 16 O -0.229 6.229 17 C -0.201 4.201 18 H 0.111 0.889 19 H 0.125 0.875 20 H 0.146 0.854 21 H 0.127 0.873 22 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.136 -0.263 -1.105 1.144 hybrid contribution -0.002 0.099 0.082 0.129 sum 0.133 -0.164 -1.023 1.045 Atomic orbital electron populations 1.69235 1.10140 1.31942 1.29953 1.28365 0.95308 1.05072 0.90187 0.84970 0.79628 0.74838 0.79161 1.17572 1.18717 1.18692 1.21030 0.96596 0.90492 1.43987 0.89411 1.17775 0.91238 0.93587 0.88496 1.21404 1.04149 0.92894 1.09030 1.20638 0.93923 0.97554 0.95971 1.21396 1.03667 0.94195 1.14125 1.17487 0.87067 0.95441 0.96083 1.63584 1.16771 1.10563 1.32384 1.26186 0.81255 0.77709 0.81345 1.90972 1.52122 1.13131 1.66655 1.21208 0.99440 0.94860 1.04607 0.88892 0.87482 0.85372 0.87328 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.12 10.85 23.16 0.25 -38.87 14 2 C 0.03 1.56 5.39 87.10 0.47 2.03 14 3 Si 0.99 35.28 29.66 68.60 2.03 37.31 14 4 H -0.25 -8.73 7.11 99.48 0.71 -8.02 14 5 H -0.26 -8.97 7.11 99.48 0.71 -8.26 14 6 H -0.26 -8.86 7.11 99.48 0.71 -8.15 14 7 C -0.49 -25.32 9.31 24.90 0.23 -25.09 14 8 H 0.09 4.28 7.96 -2.91 -0.02 4.25 14 9 C 0.09 4.83 5.61 -21.33 -0.12 4.71 14 10 C -0.26 -12.07 9.82 23.00 0.23 -11.84 14 11 C -0.06 -2.66 10.00 22.16 0.22 -2.44 14 12 C -0.31 -13.65 9.29 23.01 0.21 -13.44 14 13 C 0.13 6.35 6.51 39.84 0.26 6.61 14 14 N -0.49 -20.80 10.16 -214.46 -2.18 -22.97 14 15 C 0.64 23.11 14.93 131.22 1.96 25.07 14 16 O -0.37 -12.92 18.00 -1.70 -0.03 -12.95 14 17 C -0.18 -9.49 8.70 23.17 0.20 -9.28 14 18 H 0.30 13.10 8.27 -92.71 -0.77 12.33 14 19 H 0.11 4.67 8.06 -2.91 -0.02 4.65 14 20 H 0.13 4.48 8.06 -2.91 -0.02 4.46 14 21 H 0.11 4.22 7.01 -2.91 -0.02 4.20 14 22 H 0.12 6.35 6.04 -2.91 -0.02 6.33 14 Total: -1.00 -54.36 214.96 4.99 -49.38 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.25 Total: 11.78 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.66 Total: -23.67 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -1.93 Total: -61.85 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.03 Total: -12.95 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Total: -54.36 4.99 -49.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260601747.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.840 kcal (2) G-P(sol) polarization free energy of solvation -54.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds