Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86805 * 119.99986 * 2 1 4 4 H 1.48504 * 109.46924 * 270.00439 * 3 2 1 5 5 H 1.48499 * 109.47137 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47162 * 150.00127 * 3 2 1 7 7 C 1.39938 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.41232 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.40439 * 119.67942 * 179.97438 * 9 7 2 11 11 C 1.39241 * 118.45233 * 180.02562 * 10 9 7 12 12 C 1.46181 * 135.07419 * 180.02562 * 11 10 9 13 13 C 1.34444 * 106.85506 * 180.24120 * 12 11 10 14 14 N 1.36637 * 110.02235 * 359.60150 * 13 12 11 15 15 H 0.96996 * 124.96949 * 180.13334 * 14 13 12 16 16 C 1.37180 * 110.06157 * 0.41098 * 14 13 12 17 17 C 1.39500 * 134.09016 * 179.72918 * 16 14 13 18 18 N 1.31235 * 120.76102 * 180.02562 * 17 16 14 19 19 H 0.96994 * 120.00078 * 359.97438 * 1 2 3 20 20 H 1.08008 * 120.77062 * 0.02776 * 10 9 7 21 21 H 1.08002 * 126.57011 * 359.97018 * 12 11 10 22 22 H 1.07999 * 124.98834 * 179.75260 * 13 12 11 23 23 H 1.07995 * 119.62091 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0880 -1.2119 -0.0010 9 6 1.3019 -2.4350 -0.0005 10 6 2.0109 -3.6473 -0.0016 11 6 1.2892 -4.8380 -0.0022 12 6 1.6354 -6.2582 -0.0028 13 6 0.4777 -6.9417 -0.0085 14 7 -0.5778 -6.0741 -0.0026 15 1 -1.5120 -6.3351 -0.0032 16 6 -0.1232 -4.7798 -0.0020 17 6 -0.7468 -3.5320 -0.0019 18 7 -0.0381 -2.4275 -0.0017 19 1 -0.4850 0.8400 0.0004 20 1 3.0910 -3.6557 -0.0020 21 1 2.6306 -6.6779 -0.0034 22 1 0.3943 -8.0185 -0.0142 23 1 -1.8252 -3.4742 -0.0019 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260641748.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = 44.331621 kcal Electronic energy + Delta-G solvation = -10677.266303 eV Core-core repulsion = 8682.970752 eV Total energy + Delta-G solvation = -1994.295551 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.69172 -38.43497 -35.11757 -32.78404 -30.89263 -29.94849 -27.05118 -23.87610 -22.63658 -21.31013 -19.42771 -18.40765 -17.22109 -16.40379 -15.78253 -15.19154 -15.02931 -14.45995 -13.87234 -13.57968 -13.37971 -12.68242 -12.63080 -12.56680 -12.15639 -11.72318 -11.07685 -10.54086 -9.68183 -9.17961 -8.62170 -8.29033 -6.30060 0.61101 1.13649 1.40917 1.54570 1.57630 2.17104 2.26154 2.64125 2.87189 3.94101 4.08467 4.26196 4.51115 4.60336 4.84014 5.00295 5.21097 5.26206 5.49083 5.66527 5.86869 6.14604 6.24932 6.39211 6.79536 7.01808 7.09270 8.11294 8.50911 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.091805 B = 0.010608 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.920170 B = 2638.805347 C = 2933.882725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.024 3.976 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.481 4.481 8 H 0.082 0.918 9 C 0.208 3.792 10 C -0.296 4.296 11 C -0.063 4.063 12 C -0.276 4.276 13 C 0.087 3.913 14 N -0.578 5.578 15 H 0.424 0.576 16 C -0.082 4.082 17 C 0.112 3.888 18 N -0.482 5.482 19 H 0.278 0.722 20 H 0.096 0.904 21 H 0.149 0.851 22 H 0.218 0.782 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -7.545 -0.016 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.087 3.913 10 C -0.320 4.320 11 C -0.073 4.073 12 C -0.303 4.303 13 C -0.044 4.044 14 N -0.183 5.183 15 H 0.263 0.737 16 C -0.189 4.189 17 C -0.061 4.061 18 N -0.193 5.193 19 H 0.088 0.912 20 H 0.114 0.886 21 H 0.166 0.834 22 H 0.235 0.765 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.004 -6.535 -0.010 6.835 hybrid contribution 0.453 -0.105 -0.011 0.465 sum -1.551 -6.640 -0.021 6.819 Atomic orbital electron populations 1.70235 1.08707 1.28888 1.31418 1.26956 0.95817 1.04419 0.92385 0.85130 0.78894 0.75708 0.79416 1.18716 1.19025 1.18171 1.19757 0.94460 0.90461 1.46510 0.89984 1.18771 0.88281 0.93130 0.91121 1.21119 0.98289 0.91699 1.20900 1.19620 0.93059 0.94513 1.00079 1.21772 0.99328 0.89918 1.19248 1.22417 0.85299 0.96879 0.99836 1.41304 1.08978 1.02664 1.65378 0.73729 1.19284 0.94499 0.87362 1.17802 1.22315 0.99765 0.85597 0.98386 1.68585 1.08019 1.26730 1.16014 0.91190 0.88562 0.83352 0.76544 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.47 11.44 21.82 0.25 -43.22 14 2 C 0.02 1.29 5.50 85.26 0.47 1.76 14 3 Si 0.99 40.30 29.56 68.60 2.03 42.33 14 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 14 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 14 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 14 7 C -0.48 -28.16 9.12 23.42 0.21 -27.95 14 8 H 0.08 4.56 7.85 -2.91 -0.02 4.54 14 9 C 0.21 12.54 6.56 40.09 0.26 12.80 14 10 C -0.30 -16.42 9.90 23.05 0.23 -16.19 14 11 C -0.06 -3.08 6.42 -20.21 -0.13 -3.21 14 12 C -0.28 -10.32 11.09 23.47 0.26 -10.06 14 13 C 0.09 2.47 11.81 83.08 0.98 3.45 14 14 N -0.58 -18.51 6.03 -187.15 -1.13 -19.64 14 15 H 0.42 9.86 8.96 -92.71 -0.83 9.03 14 16 C -0.08 -3.68 7.33 39.38 0.29 -3.39 14 17 C 0.11 5.58 11.23 85.09 0.96 6.53 14 18 N -0.48 -28.31 7.79 -188.69 -1.47 -29.78 14 19 H 0.28 14.09 8.30 -92.71 -0.77 13.33 14 20 H 0.10 5.11 8.06 -2.91 -0.02 5.09 14 21 H 0.15 4.83 8.06 -2.91 -0.02 4.81 14 22 H 0.22 3.44 8.06 -2.91 -0.02 3.42 14 23 H 0.15 6.15 8.06 -2.91 -0.02 6.13 14 Total: -1.00 -72.40 212.44 3.61 -68.78 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.40 Total: 17.76 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 3.53 Total: -36.24 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -2.35 Total: -92.63 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -72.40 3.61 -68.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260641748.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.116 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds