Wall clock time and date at job start Mon Mar 30 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47562 * 274.76750 * 3 2 1 5 5 H 1.48502 * 109.47117 * 34.76949 * 3 2 1 6 6 H 1.48497 * 109.47299 * 154.76540 * 3 2 1 7 7 C 1.38884 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 169.22810 * 7 2 1 9 9 N 1.37185 * 120.00041 * 349.21685 * 7 2 1 10 10 C 1.36924 * 125.08523 * 338.95222 * 9 7 2 11 11 C 1.34489 * 109.96740 * 179.97438 * 10 9 7 12 12 C 1.46196 * 107.02486 * 0.02562 * 11 10 9 13 13 C 1.39698 * 135.20122 * 179.97438 * 12 11 10 14 14 C 1.36808 * 118.69414 * 180.31853 * 13 12 11 15 15 N 1.32247 * 121.29585 * 359.33947 * 14 13 12 16 16 C 1.31837 * 122.54814 * 0.74432 * 15 14 13 17 17 C 1.37918 * 125.07901 * 158.92685 * 9 7 2 18 18 H 0.96993 * 119.99910 * 359.97438 * 1 2 3 19 19 H 1.08004 * 125.01306 * 359.95560 * 10 9 7 20 20 H 1.07993 * 126.48768 * 180.02562 * 11 10 9 21 21 H 1.08005 * 120.64964 * 0.04152 * 13 12 11 22 22 H 1.08004 * 119.34850 * 179.69646 * 14 13 12 23 23 H 1.07995 * 119.85681 * 179.61437 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3949 2.1047 -1.3952 5 1 1.4996 2.6214 0.7984 6 1 3.5924 1.4133 0.5969 7 6 2.0086 -1.2028 -0.0005 8 1 3.0744 -1.2110 -0.1754 9 7 1.3409 -2.3804 0.2212 10 6 0.1254 -2.4912 0.8418 11 6 -0.2463 -3.7825 0.8967 12 6 0.8157 -4.5610 0.2614 13 6 1.0325 -5.9168 0.0040 14 6 2.1871 -6.2889 -0.6286 15 7 3.0829 -5.3925 -1.0065 16 6 2.9301 -4.1013 -0.7880 17 6 1.7933 -3.6299 -0.1481 18 1 -0.4850 0.8400 0.0004 19 1 -0.4498 -1.6636 1.2302 20 1 -1.1568 -4.1709 1.3284 21 1 0.3050 -6.6572 0.3027 22 1 2.3678 -7.3348 -0.8284 23 1 3.6927 -3.4077 -1.1099 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260776302.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:22 Heat of formation + Delta-G solvation = 63.108395 kcal Electronic energy + Delta-G solvation = -10816.251945 eV Core-core repulsion = 8822.770616 eV Total energy + Delta-G solvation = -1993.481329 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.29478 -37.11833 -33.45253 -31.29998 -29.02615 -28.59162 -25.04480 -22.28988 -21.15574 -19.96908 -17.86069 -15.86103 -15.58113 -14.84401 -14.50151 -13.74109 -13.44076 -13.16538 -12.28154 -12.06578 -11.77764 -11.30418 -10.94900 -10.86141 -10.72043 -10.41283 -9.48622 -8.88123 -8.61576 -7.39007 -7.10741 -6.77409 -4.42590 2.01843 2.59096 2.97059 2.98502 3.03899 3.72992 3.96922 4.69594 4.71022 5.05366 5.44319 5.72244 6.07309 6.14962 6.31943 6.59715 6.83305 6.85263 6.92520 7.04062 7.35089 7.50604 7.78795 7.97142 8.34226 8.81795 9.06972 9.27532 10.16695 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.063664 B = 0.012549 C = 0.010671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.706413 B = 2230.698667 C = 2623.262049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.342 4.342 8 H 0.109 0.891 9 N -0.275 5.275 10 C 0.089 3.911 11 C -0.280 4.280 12 C -0.099 4.099 13 C -0.132 4.132 14 C 0.015 3.985 15 N -0.501 5.501 16 C 0.124 3.876 17 C -0.005 4.005 18 H 0.281 0.719 19 H 0.174 0.826 20 H 0.127 0.873 21 H 0.113 0.887 22 H 0.134 0.866 23 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 -1.361 1.167 1.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.127 0.873 9 N 0.062 4.938 10 C -0.048 4.048 11 C -0.304 4.304 12 C -0.111 4.111 13 C -0.153 4.153 14 C -0.132 4.132 15 N -0.212 5.212 16 C -0.045 4.045 17 C -0.120 4.120 18 H 0.092 0.908 19 H 0.191 0.809 20 H 0.145 0.855 21 H 0.131 0.869 22 H 0.152 0.848 23 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.507 -1.268 0.685 2.085 hybrid contribution -0.630 1.096 0.367 1.316 sum 0.877 -0.172 1.052 1.380 Atomic orbital electron populations 1.69871 1.06374 1.29135 1.42723 1.25546 0.95752 1.00713 0.94542 0.85659 0.79481 0.79275 0.78948 1.19622 1.19994 1.18677 1.19936 0.94121 0.82011 1.50953 0.87300 1.40179 1.14275 1.03369 1.35933 1.22235 0.88309 0.97135 0.97079 1.21236 1.01125 0.92325 1.15763 1.19210 0.95933 0.92529 1.03428 1.20940 0.98473 0.94289 1.01569 1.21610 0.92054 0.97926 1.01654 1.67444 1.31337 1.01456 1.20937 1.21473 0.94497 0.91605 0.96892 1.19386 0.99056 0.86759 1.06768 0.90800 0.80866 0.85466 0.86920 0.84818 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.32 10.84 55.49 0.60 -20.72 14 2 C 0.04 1.05 5.35 -17.49 -0.09 0.96 14 3 Si 0.94 18.42 29.56 -169.99 -5.03 13.40 14 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 7 C -0.34 -8.74 9.96 -14.92 -0.15 -8.89 14 8 H 0.11 2.62 7.85 -52.49 -0.41 2.21 14 9 N -0.27 -7.18 2.91 -59.71 -0.17 -7.35 14 10 C 0.09 2.24 9.89 -16.60 -0.16 2.07 14 11 C -0.28 -6.52 11.08 -37.71 -0.42 -6.94 14 12 C -0.10 -2.37 6.44 -105.08 -0.68 -3.05 14 13 C -0.13 -2.74 10.13 -39.55 -0.40 -3.15 14 14 C 0.02 0.31 11.11 -17.89 -0.20 0.11 14 15 N -0.50 -11.12 10.32 -13.39 -0.14 -11.26 14 16 C 0.12 2.85 11.16 -17.37 -0.19 2.66 14 17 C -0.01 -0.14 6.78 -83.87 -0.57 -0.70 14 18 H 0.28 6.49 8.31 -40.82 -0.34 6.15 14 19 H 0.17 4.30 6.33 -52.48 -0.33 3.96 14 20 H 0.13 2.57 8.06 -52.49 -0.42 2.15 14 21 H 0.11 1.97 8.06 -52.48 -0.42 1.55 14 22 H 0.13 2.23 8.06 -52.48 -0.42 1.80 14 23 H 0.14 2.92 8.06 -52.49 -0.42 2.50 14 LS Contribution 211.59 15.07 3.19 3.19 Total: -1.00 -27.74 211.59 -5.98 -33.73 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -1.57 Total: 5.94 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.86 Total: -16.93 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.29 Total: -39.32 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -27.74 -5.98 -33.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776302.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.834 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds