Wall clock time and date at job start Mon Mar 30 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47562 * 274.76750 * 3 2 1 5 5 H 1.48502 * 109.47117 * 34.76949 * 3 2 1 6 6 H 1.48497 * 109.47299 * 154.76540 * 3 2 1 7 7 C 1.38884 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 169.22810 * 7 2 1 9 9 N 1.37185 * 120.00041 * 349.21685 * 7 2 1 10 10 C 1.36924 * 125.08523 * 338.95222 * 9 7 2 11 11 C 1.34489 * 109.96740 * 179.97438 * 10 9 7 12 12 C 1.46196 * 107.02486 * 0.02562 * 11 10 9 13 13 C 1.39698 * 135.20122 * 179.97438 * 12 11 10 14 14 C 1.36808 * 118.69414 * 180.31853 * 13 12 11 15 15 N 1.32247 * 121.29585 * 359.33947 * 14 13 12 16 16 C 1.31837 * 122.54814 * 0.74432 * 15 14 13 17 17 C 1.37918 * 125.07901 * 158.92685 * 9 7 2 18 18 H 0.96993 * 119.99910 * 359.97438 * 1 2 3 19 19 H 1.08004 * 125.01306 * 359.95560 * 10 9 7 20 20 H 1.07993 * 126.48768 * 180.02562 * 11 10 9 21 21 H 1.08005 * 120.64964 * 0.04152 * 13 12 11 22 22 H 1.08004 * 119.34850 * 179.69646 * 14 13 12 23 23 H 1.07995 * 119.85681 * 179.61437 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3949 2.1047 -1.3952 5 1 1.4996 2.6214 0.7984 6 1 3.5924 1.4133 0.5969 7 6 2.0086 -1.2028 -0.0005 8 1 3.0744 -1.2110 -0.1754 9 7 1.3409 -2.3804 0.2212 10 6 0.1254 -2.4912 0.8418 11 6 -0.2463 -3.7825 0.8967 12 6 0.8157 -4.5610 0.2614 13 6 1.0325 -5.9168 0.0040 14 6 2.1871 -6.2889 -0.6286 15 7 3.0829 -5.3925 -1.0065 16 6 2.9301 -4.1013 -0.7880 17 6 1.7933 -3.6299 -0.1481 18 1 -0.4850 0.8400 0.0004 19 1 -0.4498 -1.6636 1.2302 20 1 -1.1568 -4.1709 1.3284 21 1 0.3050 -6.6572 0.3027 22 1 2.3678 -7.3348 -0.8284 23 1 3.6927 -3.4077 -1.1099 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260776302.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:22 Heat of formation + Delta-G solvation = 47.470769 kcal Electronic energy + Delta-G solvation = -10816.930043 eV Core-core repulsion = 8822.770616 eV Total energy + Delta-G solvation = -1994.159427 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.08444 -38.86544 -35.27907 -33.07692 -30.79022 -30.38327 -26.89591 -24.05222 -22.89946 -21.80613 -19.67055 -17.69405 -17.33167 -16.54563 -16.18769 -15.56214 -15.17038 -14.82643 -14.01548 -13.81848 -13.52318 -12.94434 -12.76502 -12.60269 -12.33636 -12.05344 -11.25914 -10.64466 -10.33806 -9.22413 -8.91178 -8.58534 -6.32858 0.27222 0.85024 1.37486 1.41629 1.53575 2.06981 2.17430 2.87152 2.90866 3.28558 3.79180 4.10305 4.33223 4.46157 4.60149 4.90387 5.04168 5.08631 5.15460 5.24465 5.57024 5.68716 6.06551 6.20177 6.48297 6.97902 7.33780 7.41881 8.36440 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.063664 B = 0.012549 C = 0.010671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.706413 B = 2230.698667 C = 2623.262049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.004 3.996 3 Si 1.015 2.985 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.377 4.377 8 H 0.112 0.888 9 N -0.294 5.294 10 C 0.064 3.936 11 C -0.277 4.277 12 C -0.122 4.122 13 C -0.128 4.128 14 C 0.016 3.984 15 N -0.504 5.504 16 C 0.109 3.891 17 C -0.036 4.036 18 H 0.287 0.713 19 H 0.167 0.833 20 H 0.156 0.844 21 H 0.151 0.849 22 H 0.177 0.823 23 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -2.082 1.112 2.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.201 4.201 3 Si 0.834 3.166 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.504 4.504 8 H 0.130 0.870 9 N 0.043 4.957 10 C -0.072 4.072 11 C -0.301 4.301 12 C -0.134 4.134 13 C -0.148 4.148 14 C -0.132 4.132 15 N -0.215 5.215 16 C -0.059 4.059 17 C -0.149 4.149 18 H 0.098 0.902 19 H 0.184 0.816 20 H 0.173 0.827 21 H 0.168 0.832 22 H 0.194 0.806 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.774 -2.008 0.631 2.753 hybrid contribution -0.736 1.165 0.365 1.425 sum 1.038 -0.843 0.996 1.668 Atomic orbital electron populations 1.69949 1.07768 1.30329 1.43036 1.26537 0.96555 1.03694 0.93349 0.84611 0.78271 0.74616 0.79056 1.19155 1.19192 1.18061 1.20321 0.94678 0.82808 1.52546 0.87043 1.40388 1.14757 1.03862 1.36733 1.22337 0.88696 0.97857 0.98351 1.21592 1.01876 0.91671 1.14971 1.19665 0.95860 0.93960 1.03892 1.21352 0.99347 0.93623 1.00453 1.22342 0.91241 0.99493 1.00137 1.67521 1.31999 1.01203 1.20754 1.21663 0.94521 0.92376 0.97354 1.19845 1.00294 0.87010 1.07792 0.90233 0.81585 0.82650 0.83156 0.80551 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.77 10.84 21.65 0.23 -44.53 14 2 C 0.00 0.22 5.35 84.91 0.45 0.67 14 3 Si 1.01 37.58 29.56 68.60 2.03 39.61 14 4 H -0.27 -9.63 7.11 99.48 0.71 -8.93 14 5 H -0.27 -9.49 7.11 99.48 0.71 -8.78 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 7 C -0.38 -19.64 9.96 84.01 0.84 -18.80 14 8 H 0.11 5.50 7.85 -2.91 -0.02 5.48 14 9 N -0.29 -15.67 2.91 -342.82 -1.00 -16.67 14 10 C 0.06 3.27 9.89 83.04 0.82 4.09 14 11 C -0.28 -12.76 11.08 23.48 0.26 -12.50 14 12 C -0.12 -5.71 6.44 -20.16 -0.13 -5.84 14 13 C -0.13 -4.93 10.13 22.29 0.23 -4.70 14 14 C 0.02 0.58 11.11 84.30 0.94 1.52 14 15 N -0.50 -21.47 10.32 -196.29 -2.03 -23.50 14 16 C 0.11 5.01 11.16 84.81 0.95 5.96 14 17 C -0.04 -1.80 6.78 39.00 0.26 -1.53 14 18 H 0.29 13.37 8.31 -92.71 -0.77 12.60 14 19 H 0.17 8.52 6.33 -2.91 -0.02 8.50 14 20 H 0.16 6.03 8.06 -2.91 -0.02 6.00 14 21 H 0.15 4.59 8.06 -2.91 -0.02 4.57 14 22 H 0.18 5.01 8.06 -2.91 -0.02 4.99 14 23 H 0.15 6.28 8.06 -2.91 -0.02 6.25 14 Total: -1.00 -59.09 211.59 5.07 -54.02 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 1.22 Total: 22.21 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 4.62 Total: -31.14 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.79 Total: -84.70 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -59.09 5.07 -54.02 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776302.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.491 kcal (2) G-P(sol) polarization free energy of solvation -59.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds