Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86806 * 120.00105 * 2 1 4 4 H 1.48489 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46738 * 300.00511 * 3 2 1 6 6 H 1.48495 * 109.46878 * 60.00284 * 3 2 1 7 7 C 1.40506 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00060 * 163.00356 * 7 2 1 9 9 C 1.39343 * 119.99936 * 342.99777 * 7 2 1 10 10 C 1.40528 * 120.86527 * 335.20842 * 9 7 2 11 11 C 1.38657 * 118.78442 * 179.97438 * 10 9 7 12 12 N 1.31843 * 120.76213 * 0.02562 * 11 10 9 13 13 C 1.33506 * 121.86529 * 359.96289 * 12 11 10 14 14 N 1.32943 * 131.76816 * 179.97438 * 13 12 11 15 15 C 1.33094 * 109.31946 * 180.02562 * 14 13 12 16 16 C 1.35775 * 108.61718 * 0.02562 * 15 14 13 17 17 N 1.36434 * 107.03986 * 359.97438 * 16 15 14 18 18 H 0.97001 * 119.99976 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.60882 * 0.02562 * 10 9 7 20 20 H 1.08008 * 119.61894 * 180.02562 * 11 10 9 21 21 H 1.08000 * 125.68509 * 179.97438 * 15 14 13 22 22 H 1.08007 * 126.48423 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6992 1.3465 -0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8806 2.3964 1.2125 7 6 2.0078 -1.2168 -0.0005 8 1 3.0524 -1.2371 -0.2740 9 6 1.3567 -2.3973 0.3518 10 6 0.2203 -2.3750 1.1782 11 6 -0.3940 -3.5753 1.5012 12 7 0.0770 -4.7185 1.0436 13 6 1.1542 -4.7725 0.2567 14 7 1.7888 -5.7958 -0.3068 15 6 2.8225 -5.3395 -1.0101 16 6 2.8590 -3.9868 -0.8990 17 7 1.8122 -3.6226 -0.1035 18 1 -0.4850 0.8401 0.0004 19 1 -0.1679 -1.4399 1.5541 20 1 -1.2686 -3.5737 2.1351 21 1 3.5169 -5.9445 -1.5742 22 1 3.5804 -3.3243 -1.3543 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260930361.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = 66.024196 kcal Electronic energy + Delta-G solvation = -11022.859641 eV Core-core repulsion = 8964.078840 eV Total energy + Delta-G solvation = -2058.780801 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.14039 -38.48838 -36.47724 -34.44720 -31.15486 -29.85684 -28.37582 -24.45357 -23.57716 -22.20889 -19.45747 -18.71723 -17.79692 -17.12015 -16.58234 -15.96817 -14.96374 -14.68999 -14.28025 -13.85138 -13.73295 -13.10969 -12.76400 -12.67015 -12.16651 -12.02003 -11.24200 -10.97978 -10.24246 -9.64770 -9.12287 -8.83491 -6.92985 0.32903 0.75421 1.35197 1.42982 1.55714 2.01764 2.12488 2.20464 2.62534 3.30586 3.32966 4.13590 4.28534 4.53563 4.71922 4.77101 4.96730 5.16887 5.34668 5.60228 5.87175 6.02912 6.14736 6.28476 6.46625 7.21541 7.64917 7.85407 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.053958 B = 0.013998 C = 0.011443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.800243 B = 1999.824384 C = 2446.391932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.043 3.957 3 Si 1.010 2.990 4 H -0.253 1.253 5 H -0.258 1.258 6 H -0.253 1.253 7 C -0.432 4.432 8 H 0.105 0.895 9 C 0.260 3.740 10 C -0.334 4.334 11 C 0.171 3.829 12 N -0.603 5.603 13 C 0.383 3.617 14 N -0.564 5.564 15 C 0.015 3.985 16 C -0.132 4.132 17 N -0.432 5.432 18 H 0.312 0.688 19 H 0.148 0.852 20 H 0.178 0.822 21 H 0.210 0.790 22 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 7.216 -0.571 8.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.183 4.183 3 Si 0.827 3.173 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.177 1.177 7 C -0.464 4.464 8 H 0.122 0.878 9 C 0.153 3.847 10 C -0.362 4.362 11 C 0.005 3.995 12 N -0.329 5.329 13 C 0.033 3.967 14 N -0.291 5.291 15 C -0.136 4.136 16 C -0.264 4.264 17 N -0.113 5.113 18 H 0.124 0.876 19 H 0.165 0.835 20 H 0.195 0.805 21 H 0.226 0.774 22 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.973 5.629 -0.382 6.377 hybrid contribution 0.643 1.923 -0.321 2.053 sum 3.616 7.552 -0.703 8.403 Atomic orbital electron populations 1.69680 1.09642 1.33311 1.25764 1.27112 0.95727 1.04940 0.90489 0.84724 0.79158 0.73544 0.79878 1.17567 1.18177 1.17733 1.19829 0.99037 0.90504 1.36996 0.87751 1.18809 0.92464 0.82787 0.90609 1.21706 1.03570 0.99685 1.11221 1.22812 0.96622 0.86776 0.93284 1.67499 1.14638 1.29897 1.20840 1.22320 0.93843 0.82060 0.98490 1.70446 1.11989 1.27568 1.19064 1.22942 0.97441 0.92121 1.01123 1.22800 0.98298 0.97833 1.07438 1.44690 1.23101 1.08911 1.34566 0.87593 0.83482 0.80511 0.77378 0.79208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -32.53 10.94 21.92 0.24 -32.29 14 2 C 0.04 1.75 5.17 85.44 0.44 2.19 14 3 Si 1.01 29.68 29.60 68.60 2.03 31.71 14 4 H -0.25 -7.34 7.11 99.48 0.71 -6.63 14 5 H -0.26 -7.23 7.11 99.48 0.71 -6.52 14 6 H -0.25 -7.07 7.11 99.48 0.71 -6.36 14 7 C -0.43 -19.93 8.82 23.09 0.20 -19.72 14 8 H 0.10 4.49 7.82 -2.91 -0.02 4.47 14 9 C 0.26 13.38 6.47 38.93 0.25 13.63 14 10 C -0.33 -16.53 8.77 22.93 0.20 -16.33 14 11 C 0.17 8.24 11.21 84.79 0.95 9.19 14 12 N -0.60 -32.92 10.42 -198.07 -2.06 -34.99 14 13 C 0.38 21.43 8.92 261.38 2.33 23.77 14 14 N -0.56 -29.93 11.30 -199.44 -2.25 -32.19 14 15 C 0.01 0.63 11.84 83.93 0.99 1.63 14 16 C -0.13 -5.93 11.34 83.41 0.95 -4.98 14 17 N -0.43 -22.64 3.00 -349.41 -1.05 -23.69 14 18 H 0.31 11.37 8.29 -92.71 -0.77 10.60 14 19 H 0.15 6.97 6.22 -2.91 -0.02 6.95 14 20 H 0.18 6.84 8.06 -2.91 -0.02 6.82 14 21 H 0.21 6.76 8.06 -2.91 -0.02 6.74 14 22 H 0.19 7.02 8.06 -2.91 -0.02 6.99 14 Total: -1.00 -63.49 205.64 4.47 -59.03 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.24 Total: 23.06 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 6.32 Total: 9.36 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -5.13 Total: -123.15 kcal Atomic # 14 Polarization: 29.68 SS G_CDS: 2.03 Total: 31.71 kcal Total: -63.49 4.47 -59.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260930361.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.051 kcal (2) G-P(sol) polarization free energy of solvation -63.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds