Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00272 * 2 1 4 4 H 1.48504 * 109.46855 * 95.18980 * 3 2 1 5 5 H 1.48493 * 109.47228 * 215.18607 * 3 2 1 6 6 H 1.48503 * 109.47181 * 335.19010 * 3 2 1 7 7 C 1.37874 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 6.15360 * 7 2 1 9 9 C 1.50705 * 120.00173 * 186.15883 * 7 2 1 10 10 H 1.09001 * 110.26853 * 327.80646 * 9 7 2 11 11 C 1.54411 * 110.30782 * 89.89422 * 9 7 2 12 12 C 1.54400 * 102.45473 * 92.77821 * 11 9 7 13 13 C 1.51182 * 105.20123 * 26.16096 * 12 11 9 14 14 C 1.38338 * 131.27285 * 162.95428 * 13 12 11 15 15 N 1.31833 * 120.75737 * 179.97438 * 14 13 12 16 16 C 1.31879 * 121.78782 * 359.97438 * 15 14 13 17 17 C 1.38212 * 120.71261 * 0.02800 * 16 15 14 18 18 C 1.38437 * 119.16724 * 359.97438 * 17 16 15 19 19 H 0.97006 * 119.99465 * 359.97438 * 1 2 3 20 20 H 1.08999 * 110.81246 * 211.02126 * 11 9 7 21 21 H 1.09003 * 110.81200 * 334.33810 * 11 9 7 22 22 H 1.08997 * 110.29830 * 145.09791 * 12 11 9 23 23 H 1.09002 * 110.29196 * 267.23353 * 12 11 9 24 24 H 1.08000 * 119.61677 * 359.95044 * 14 13 12 25 25 H 1.08005 * 119.64534 * 180.02562 * 16 15 14 26 26 H 1.08004 * 120.45137 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6064 1.9830 1.3944 5 1 3.4876 1.4742 -0.8067 6 1 1.3961 2.6819 -0.5875 7 6 2.0044 -1.1941 -0.0005 8 1 1.4691 -2.1266 -0.1012 9 6 3.5049 -1.1980 0.1395 10 1 3.9294 -0.3055 -0.3202 11 6 3.9040 -1.2751 1.6292 12 6 4.0640 -2.7944 1.8529 13 6 4.4091 -3.3609 0.4944 14 6 4.9589 -4.5754 0.1250 15 7 5.1753 -4.8594 -1.1441 16 6 4.8799 -4.0078 -2.1067 17 6 4.3279 -2.7750 -1.8138 18 6 4.0861 -2.4409 -0.4923 19 1 -0.4850 0.8401 0.0004 20 1 4.8464 -0.7563 1.8050 21 1 3.1159 -0.8681 2.2628 22 1 4.8702 -2.9896 2.5599 23 1 3.1299 -3.2235 2.2153 24 1 5.2141 -5.2990 0.8851 25 1 5.0714 -4.2766 -3.1351 26 1 4.0880 -2.0806 -2.6055 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260934569.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = 24.191399 kcal Electronic energy + Delta-G solvation = -11204.780592 eV Core-core repulsion = 9247.726128 eV Total energy + Delta-G solvation = -1957.054464 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.97838 -36.14811 -32.52576 -31.22020 -29.24198 -27.74838 -23.99039 -22.75874 -20.82774 -19.73772 -17.02437 -16.05970 -15.50843 -14.56313 -14.28418 -13.91285 -13.09027 -12.96680 -12.81638 -12.26438 -11.42718 -11.14921 -10.91061 -10.84232 -10.53422 -10.09102 -9.79595 -9.51993 -8.92441 -8.70594 -8.53049 -8.15695 -6.19393 -4.20203 1.72463 2.01461 3.21010 3.28889 3.29483 4.30441 4.42612 4.92471 5.04618 5.18965 5.40799 5.60196 5.76289 5.83897 5.94542 6.16998 6.30109 6.41714 6.61171 6.66864 6.77357 6.89523 7.09183 7.28891 7.35736 7.59286 8.38218 8.51296 8.84390 9.40524 10.93132 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.051063 B = 0.012984 C = 0.012048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.206731 B = 2156.058200 C = 2323.489916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.036 3.964 10 H 0.051 0.949 11 C -0.124 4.124 12 C -0.064 4.064 13 C -0.156 4.156 14 C 0.095 3.905 15 N -0.502 5.502 16 C 0.082 3.918 17 C -0.164 4.164 18 C -0.006 4.006 19 H 0.266 0.734 20 H 0.045 0.955 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.143 0.857 25 H 0.148 0.852 26 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 -2.717 0.683 9.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.213 1.213 7 C -0.541 4.541 8 H 0.092 0.908 9 C 0.017 3.983 10 H 0.069 0.931 11 C -0.162 4.162 12 C -0.102 4.102 13 C -0.158 4.158 14 C -0.061 4.061 15 N -0.211 5.211 16 C -0.074 4.074 17 C -0.183 4.183 18 C -0.014 4.014 19 H 0.076 0.924 20 H 0.064 0.936 21 H 0.096 0.904 22 H 0.079 0.921 23 H 0.098 0.902 24 H 0.160 0.840 25 H 0.165 0.835 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.766 -3.408 0.457 9.416 hybrid contribution -0.135 1.675 0.106 1.683 sum 8.632 -1.733 0.563 8.822 Atomic orbital electron populations 1.69894 1.06261 1.27212 1.49770 1.25009 0.94704 0.98870 0.94144 0.86859 0.80153 0.83668 0.79114 1.19737 1.18992 1.21289 1.20688 0.87638 0.94851 1.50878 0.90794 1.18963 0.97070 0.91274 0.91012 0.93074 1.22683 0.99695 0.94109 0.99712 1.20836 1.00645 0.96384 0.92308 1.21750 1.00340 0.95601 0.98101 1.22020 0.96794 0.94413 0.92845 1.67588 1.18796 1.34079 1.00685 1.22493 0.96502 0.90232 0.98182 1.21578 1.01690 0.98280 0.96798 1.21370 0.89559 0.97874 0.92573 0.92378 0.93589 0.90393 0.92072 0.90229 0.83958 0.83488 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 15 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.87 20.56 27.36 -169.99 -4.65 15.91 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.26 -5.98 6.31 56.52 0.36 -5.62 15 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.50 -13.65 8.79 -34.44 -0.30 -13.96 15 8 H 0.07 2.24 8.06 -52.49 -0.42 1.82 15 9 C 0.04 0.82 2.33 -92.01 -0.21 0.60 15 10 H 0.05 1.19 5.38 -51.93 -0.28 0.91 15 11 C -0.12 -2.48 6.51 -25.26 -0.16 -2.65 15 12 C -0.06 -1.15 6.76 -26.91 -0.18 -1.33 15 13 C -0.16 -3.02 6.19 -104.17 -0.64 -3.67 15 14 C 0.10 1.71 11.19 -17.51 -0.20 1.51 15 15 N -0.50 -9.30 10.36 -13.22 -0.14 -9.44 15 16 C 0.08 1.45 11.19 -17.54 -0.20 1.25 15 17 C -0.16 -3.16 10.10 -39.52 -0.40 -3.55 15 18 C -0.01 -0.12 5.51 -104.20 -0.57 -0.70 15 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.08 1.63 7.89 -51.93 -0.41 1.22 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 24 H 0.14 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.15 2.06 8.06 -52.48 -0.42 1.63 15 26 H 0.13 2.27 8.06 -52.48 -0.42 1.85 15 LS Contribution 224.47 15.07 3.38 3.38 Total: -1.00 -29.64 224.47 -6.43 -36.07 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -2.83 Total: 0.28 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.97 Total: -20.50 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.64 Total: -35.15 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.65 Total: 15.91 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.64 -6.43 -36.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260934569.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.264 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds