Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00272 * 2 1 4 4 H 1.48504 * 109.46855 * 95.18980 * 3 2 1 5 5 H 1.48493 * 109.47228 * 215.18607 * 3 2 1 6 6 H 1.48503 * 109.47181 * 335.19010 * 3 2 1 7 7 C 1.37874 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 6.15360 * 7 2 1 9 9 C 1.50705 * 120.00173 * 186.15883 * 7 2 1 10 10 H 1.09001 * 110.26853 * 327.80646 * 9 7 2 11 11 C 1.54411 * 110.30782 * 89.89422 * 9 7 2 12 12 C 1.54400 * 102.45473 * 92.77821 * 11 9 7 13 13 C 1.51182 * 105.20123 * 26.16096 * 12 11 9 14 14 C 1.38338 * 131.27285 * 162.95428 * 13 12 11 15 15 N 1.31833 * 120.75737 * 179.97438 * 14 13 12 16 16 C 1.31879 * 121.78782 * 359.97438 * 15 14 13 17 17 C 1.38212 * 120.71261 * 0.02800 * 16 15 14 18 18 C 1.38437 * 119.16724 * 359.97438 * 17 16 15 19 19 H 0.97006 * 119.99465 * 359.97438 * 1 2 3 20 20 H 1.08999 * 110.81246 * 211.02126 * 11 9 7 21 21 H 1.09003 * 110.81200 * 334.33810 * 11 9 7 22 22 H 1.08997 * 110.29830 * 145.09791 * 12 11 9 23 23 H 1.09002 * 110.29196 * 267.23353 * 12 11 9 24 24 H 1.08000 * 119.61677 * 359.95044 * 14 13 12 25 25 H 1.08005 * 119.64534 * 180.02562 * 16 15 14 26 26 H 1.08004 * 120.45137 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6064 1.9830 1.3944 5 1 3.4876 1.4742 -0.8067 6 1 1.3961 2.6819 -0.5875 7 6 2.0044 -1.1941 -0.0005 8 1 1.4691 -2.1266 -0.1012 9 6 3.5049 -1.1980 0.1395 10 1 3.9294 -0.3055 -0.3202 11 6 3.9040 -1.2751 1.6292 12 6 4.0640 -2.7944 1.8529 13 6 4.4091 -3.3609 0.4944 14 6 4.9589 -4.5754 0.1250 15 7 5.1753 -4.8594 -1.1441 16 6 4.8799 -4.0078 -2.1067 17 6 4.3279 -2.7750 -1.8138 18 6 4.0861 -2.4409 -0.4923 19 1 -0.4850 0.8401 0.0004 20 1 4.8464 -0.7563 1.8050 21 1 3.1159 -0.8681 2.2628 22 1 4.8702 -2.9896 2.5599 23 1 3.1299 -3.2235 2.2153 24 1 5.2141 -5.2990 0.8851 25 1 5.0714 -4.2766 -3.1351 26 1 4.0880 -2.0806 -2.6055 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260934569.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = 5.872942 kcal Electronic energy + Delta-G solvation = -11205.574939 eV Core-core repulsion = 9247.726128 eV Total energy + Delta-G solvation = -1957.848812 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.45542 -37.71701 -34.55797 -32.70988 -30.87737 -29.37702 -25.86003 -24.23134 -22.29446 -21.41525 -19.06534 -17.60745 -17.01856 -16.22660 -15.80950 -15.59480 -14.80819 -14.48498 -14.35920 -14.00404 -13.12234 -12.85309 -12.60907 -12.45195 -12.06559 -11.87211 -11.54248 -11.42020 -10.79584 -10.38207 -10.10465 -9.64384 -8.32661 -6.38085 0.30249 0.49106 1.35092 1.37378 1.46235 2.32124 2.96844 3.01173 3.61349 3.67255 3.90796 4.20916 4.29268 4.36056 4.49028 4.75536 4.78344 4.97110 5.04452 5.11744 5.18493 5.31923 5.47266 5.68279 5.72372 5.90444 6.24577 6.66051 7.09330 7.26270 8.83970 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.051063 B = 0.012984 C = 0.012048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.206731 B = 2156.058200 C = 2323.489916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.017 3.983 3 Si 0.942 3.058 4 H -0.256 1.256 5 H -0.248 1.248 6 H -0.288 1.288 7 C -0.502 4.502 8 H 0.023 0.977 9 C 0.031 3.969 10 H 0.049 0.951 11 C -0.123 4.123 12 C -0.059 4.059 13 C -0.164 4.164 14 C 0.098 3.902 15 N -0.510 5.510 16 C 0.088 3.912 17 C -0.178 4.178 18 C -0.042 4.042 19 H 0.268 0.732 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.177 0.823 25 H 0.184 0.816 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 -2.798 0.968 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.180 1.180 5 H -0.172 1.172 6 H -0.214 1.214 7 C -0.540 4.540 8 H 0.042 0.958 9 C 0.013 3.987 10 H 0.067 0.933 11 C -0.161 4.161 12 C -0.097 4.097 13 C -0.166 4.166 14 C -0.058 4.058 15 N -0.219 5.219 16 C -0.068 4.068 17 C -0.198 4.198 18 C -0.050 4.050 19 H 0.077 0.923 20 H 0.092 0.908 21 H 0.081 0.919 22 H 0.118 0.882 23 H 0.087 0.913 24 H 0.194 0.806 25 H 0.201 0.799 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.139 -3.505 0.746 11.701 hybrid contribution -0.888 1.570 -0.027 1.804 sum 10.251 -1.935 0.719 10.457 Atomic orbital electron populations 1.70051 1.08308 1.28305 1.51971 1.25890 0.95417 1.02920 0.93813 0.85791 0.79135 0.78418 0.80146 1.18019 1.17195 1.21366 1.20817 0.90215 0.92861 1.50122 0.95843 1.18918 0.94004 0.92389 0.93421 0.93284 1.22600 1.00431 0.96080 0.96954 1.20826 1.01599 0.94628 0.92631 1.21957 1.00522 0.95955 0.98165 1.22533 0.95482 0.94342 0.93455 1.67708 1.18876 1.34201 1.01138 1.23017 0.94942 0.89149 0.99734 1.21823 1.02110 0.99416 0.96403 1.21442 0.91488 0.97948 0.94096 0.92302 0.90758 0.91888 0.88161 0.91251 0.80581 0.79945 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 13.96 21.45 0.30 -57.75 15 2 C 0.02 0.98 5.47 84.65 0.46 1.44 15 3 Si 0.94 42.34 27.36 68.60 1.88 44.21 15 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 5 H -0.25 -10.37 6.31 99.48 0.63 -9.74 15 6 H -0.29 -12.87 7.11 99.48 0.71 -12.17 15 7 C -0.50 -28.10 8.79 25.60 0.23 -27.87 15 8 H 0.02 1.50 8.06 -2.91 -0.02 1.47 15 9 C 0.03 1.43 2.33 -11.69 -0.03 1.40 15 10 H 0.05 2.21 5.38 -2.39 -0.01 2.20 15 11 C -0.12 -4.71 6.51 31.55 0.21 -4.50 15 12 C -0.06 -2.01 6.76 30.48 0.21 -1.80 15 13 C -0.16 -6.06 6.19 -19.57 -0.12 -6.18 15 14 C 0.10 3.22 11.19 84.72 0.95 4.17 15 15 N -0.51 -17.47 10.36 -195.75 -2.03 -19.50 15 16 C 0.09 2.87 11.19 84.68 0.95 3.82 15 17 C -0.18 -6.66 10.10 22.31 0.23 -6.44 15 18 C -0.04 -1.75 5.51 -19.59 -0.11 -1.85 15 19 H 0.27 15.32 8.31 -92.70 -0.77 14.55 15 20 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.06 2.57 7.89 -2.39 -0.02 2.56 15 22 H 0.10 2.60 8.14 -2.39 -0.02 2.58 15 23 H 0.07 2.47 8.14 -2.39 -0.02 2.46 15 24 H 0.18 4.47 8.06 -2.91 -0.02 4.45 15 25 H 0.18 4.50 8.06 -2.91 -0.02 4.48 15 26 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -65.24 224.47 4.20 -61.04 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.09 Total: 9.81 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 2.96 Total: -37.82 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -1.73 Total: -77.24 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.21 kcal Total: -65.24 4.20 -61.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260934569.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.914 kcal (2) G-P(sol) polarization free energy of solvation -65.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds