Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.26115 * 300.70174 * 9 7 2 11 11 C 1.54333 * 110.29311 * 178.64450 * 9 7 2 12 12 C 1.54620 * 102.27328 * 267.37357 * 11 9 7 13 13 C 1.51220 * 105.13500 * 333.69532 * 12 11 9 14 14 C 1.38744 * 130.69606 * 197.16336 * 13 12 11 15 15 C 1.38572 * 118.56228 * 179.97438 * 14 13 12 16 16 C 1.38223 * 118.98771 * 0.02562 * 15 14 13 17 17 N 1.31692 * 120.80552 * 359.97438 * 16 15 14 18 18 C 1.32300 * 122.02979 * 0.02562 * 17 16 15 19 19 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 20 20 H 1.08995 * 110.82473 * 25.62992 * 11 9 7 21 21 H 1.09006 * 110.81773 * 149.18203 * 11 9 7 22 22 H 1.08999 * 110.29428 * 214.78797 * 12 11 9 23 23 H 1.08996 * 110.40514 * 92.66177 * 12 11 9 24 24 H 1.08000 * 120.71713 * 359.97267 * 14 13 12 25 25 H 1.08002 * 120.51093 * 180.02562 * 15 14 13 26 26 H 1.08007 * 119.60185 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8894 -0.6713 -0.8787 11 6 4.0469 -2.6412 0.0335 12 6 4.2252 -2.8907 1.5490 13 6 4.4453 -1.5212 2.1514 14 6 4.9635 -1.1472 3.3829 15 6 5.0541 0.2030 3.6811 16 6 4.6261 1.1259 2.7454 17 7 4.1393 0.7347 1.5860 18 6 4.0365 -0.5444 1.2637 19 1 -0.4850 0.8400 -0.0004 20 1 3.3200 -3.3331 -0.3916 21 1 5.0022 -2.7130 -0.4866 22 1 5.0923 -3.5265 1.7280 23 1 3.3286 -3.3482 1.9669 24 1 5.2893 -1.8923 4.0936 25 1 5.4529 0.5293 4.6303 26 1 4.6925 2.1808 2.9673 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950559.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = 36.597946 kcal Electronic energy + Delta-G solvation = -11492.816690 eV Core-core repulsion = 9536.300215 eV Total energy + Delta-G solvation = -1956.516476 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.01362 -35.76280 -32.69337 -31.73126 -28.74028 -27.83477 -23.87112 -22.81334 -21.09024 -19.54087 -17.11598 -15.90740 -15.49408 -14.63980 -14.39228 -13.72109 -12.95821 -12.83222 -12.59892 -12.16377 -11.61928 -11.24200 -10.93127 -10.71295 -10.30527 -9.74888 -9.67773 -9.46505 -9.01283 -8.69505 -7.91763 -7.87101 -6.05328 -4.11731 1.81751 1.91588 3.60168 3.73743 3.91533 4.49541 4.65723 4.83334 5.17505 5.29229 5.46934 5.51219 5.66872 5.81663 5.84368 6.01539 6.33521 6.39131 6.58891 6.62675 6.75998 6.81420 6.97322 7.24348 7.43788 7.67312 8.44032 8.74021 8.91482 9.54718 11.02964 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.036066 B = 0.021157 C = 0.015299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.173628 B = 1323.096743 C = 1829.719137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.323 1.323 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.054 3.946 10 H 0.046 0.954 11 C -0.105 4.105 12 C -0.067 4.067 13 C -0.156 4.156 14 C -0.071 4.071 15 C -0.200 4.200 16 C 0.096 3.904 17 N -0.487 5.487 18 C 0.152 3.848 19 H 0.264 0.736 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 -1.973 5.285 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.136 4.136 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.254 1.254 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.097 0.903 9 C 0.035 3.965 10 H 0.063 0.937 11 C -0.143 4.143 12 C -0.104 4.104 13 C -0.158 4.158 14 C -0.097 4.097 15 C -0.220 4.220 16 C -0.060 4.060 17 N -0.198 5.198 18 C 0.016 3.984 19 H 0.074 0.926 20 H 0.097 0.903 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.139 0.861 25 H 0.143 0.857 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.668 -1.250 4.705 10.825 hybrid contribution 0.517 0.438 0.983 1.194 sum 10.185 -0.811 5.688 11.694 Atomic orbital electron populations 1.69949 1.06683 1.27486 1.48993 1.25201 0.94994 1.00460 0.92944 0.85896 0.77188 0.81090 0.78765 1.19608 1.25396 1.19849 1.20833 0.86968 0.94877 1.52461 0.90310 1.18907 0.97124 0.91027 0.89460 0.93650 1.22286 0.99780 0.98044 0.94153 1.20884 1.00921 0.92360 0.96246 1.21472 1.00658 0.98475 0.95231 1.20915 0.97606 0.95812 0.95360 1.21740 1.05591 0.93854 1.00848 1.22440 0.94633 0.99589 0.89326 1.66901 1.14127 1.19083 1.19659 1.23185 0.88403 0.87427 0.99399 0.92625 0.90255 0.92682 0.92028 0.90219 0.86066 0.85692 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.18 13.96 55.43 0.77 -27.41 15 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 15 3 Si 0.94 25.32 23.62 -169.99 -4.01 21.31 15 4 H -0.27 -7.20 5.99 56.52 0.34 -6.86 15 5 H -0.32 -8.79 7.11 56.52 0.40 -8.39 15 6 H -0.27 -7.30 6.45 56.52 0.36 -6.94 15 7 C -0.51 -14.69 9.09 -34.44 -0.31 -15.00 15 8 H 0.08 2.37 7.82 -52.49 -0.41 1.96 15 9 C 0.05 1.32 2.34 -91.84 -0.22 1.11 15 10 H 0.05 1.14 7.18 -51.93 -0.37 0.76 15 11 C -0.10 -2.02 6.60 -25.18 -0.17 -2.18 15 12 C -0.07 -1.18 6.76 -26.78 -0.18 -1.37 15 13 C -0.16 -3.15 6.16 -104.20 -0.64 -3.80 15 14 C -0.07 -1.23 10.17 -39.27 -0.40 -1.63 15 15 C -0.20 -3.35 10.12 -39.46 -0.40 -3.75 15 16 C 0.10 1.88 10.99 -17.62 -0.19 1.69 15 17 N -0.49 -11.63 5.05 -9.18 -0.05 -11.67 15 18 C 0.15 3.61 5.81 -82.03 -0.48 3.14 15 19 H 0.26 7.88 8.31 -40.82 -0.34 7.54 15 20 H 0.08 1.49 7.74 -51.93 -0.40 1.09 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 24 H 0.12 1.66 8.06 -52.49 -0.42 1.23 15 25 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 26 H 0.14 2.35 8.06 -52.48 -0.42 1.93 15 LS Contribution 215.32 15.07 3.24 3.24 Total: -1.00 -32.80 215.32 -6.08 -38.88 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -2.96 Total: -4.51 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -3.08 Total: -19.84 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.73 Total: -39.08 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -4.01 Total: 21.31 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -32.80 -6.08 -38.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950559.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.480 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds