Wall clock time and date at job start Mon Mar 30 2020 02:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.26115 * 300.70174 * 9 7 2 11 11 C 1.54333 * 110.29311 * 178.64450 * 9 7 2 12 12 C 1.54620 * 102.27328 * 267.37357 * 11 9 7 13 13 C 1.51220 * 105.13500 * 333.69532 * 12 11 9 14 14 C 1.38744 * 130.69606 * 197.16336 * 13 12 11 15 15 C 1.38572 * 118.56228 * 179.97438 * 14 13 12 16 16 C 1.38223 * 118.98771 * 0.02562 * 15 14 13 17 17 N 1.31692 * 120.80552 * 359.97438 * 16 15 14 18 18 C 1.32300 * 122.02979 * 0.02562 * 17 16 15 19 19 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 20 20 H 1.08995 * 110.82473 * 25.62992 * 11 9 7 21 21 H 1.09006 * 110.81773 * 149.18203 * 11 9 7 22 22 H 1.08999 * 110.29428 * 214.78797 * 12 11 9 23 23 H 1.08996 * 110.40514 * 92.66177 * 12 11 9 24 24 H 1.08000 * 120.71713 * 359.97267 * 14 13 12 25 25 H 1.08002 * 120.51093 * 180.02562 * 15 14 13 26 26 H 1.08007 * 119.60185 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8894 -0.6713 -0.8787 11 6 4.0469 -2.6412 0.0335 12 6 4.2252 -2.8907 1.5490 13 6 4.4453 -1.5212 2.1514 14 6 4.9635 -1.1472 3.3829 15 6 5.0541 0.2030 3.6811 16 6 4.6261 1.1259 2.7454 17 7 4.1393 0.7347 1.5860 18 6 4.0365 -0.5444 1.2637 19 1 -0.4850 0.8400 -0.0004 20 1 3.3200 -3.3331 -0.3916 21 1 5.0022 -2.7130 -0.4866 22 1 5.0923 -3.5265 1.7280 23 1 3.3286 -3.3482 1.9669 24 1 5.2893 -1.8923 4.0936 25 1 5.4529 0.5293 4.6303 26 1 4.6925 2.1808 2.9673 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950559.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:49 Heat of formation + Delta-G solvation = 14.770278 kcal Electronic energy + Delta-G solvation = -11493.763209 eV Core-core repulsion = 9536.300215 eV Total energy + Delta-G solvation = -1957.462994 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.54329 -37.36710 -34.68146 -33.44455 -30.34034 -29.52337 -25.81325 -24.28739 -22.57565 -21.24361 -19.23473 -17.46652 -16.98608 -16.56005 -15.88174 -15.50487 -14.73541 -14.54378 -14.23966 -13.84294 -13.36011 -12.82541 -12.57467 -12.35108 -12.19389 -11.75796 -11.50740 -11.39630 -10.92746 -10.48296 -9.68093 -9.43464 -8.36455 -6.42902 0.34000 0.47041 1.43002 1.56102 1.74384 2.43274 2.93378 3.02680 3.42152 3.79327 3.99817 4.19152 4.25553 4.38978 4.49742 4.60591 4.86704 4.98347 5.09891 5.16208 5.23262 5.33044 5.42901 5.53813 5.61288 5.97589 6.17638 6.64012 7.18483 7.27962 8.75588 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.036066 B = 0.021157 C = 0.015299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.173628 B = 1323.096743 C = 1829.719137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.266 1.266 5 H -0.333 1.333 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.050 0.950 9 C 0.043 3.957 10 H 0.027 0.973 11 C -0.100 4.100 12 C -0.061 4.061 13 C -0.162 4.162 14 C -0.066 4.066 15 C -0.176 4.176 16 C 0.072 3.928 17 N -0.531 5.531 18 C 0.106 3.894 19 H 0.264 0.736 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.074 0.926 24 H 0.168 0.832 25 H 0.175 0.825 26 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.729 -2.496 7.586 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.833 3.167 4 H -0.193 1.193 5 H -0.265 1.265 6 H -0.203 1.203 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.023 3.977 10 H 0.045 0.955 11 C -0.138 4.138 12 C -0.098 4.098 13 C -0.164 4.164 14 C -0.092 4.092 15 C -0.196 4.196 16 C -0.083 4.083 17 N -0.242 5.242 18 C -0.030 4.030 19 H 0.073 0.927 20 H 0.093 0.907 21 H 0.101 0.899 22 H 0.123 0.877 23 H 0.092 0.908 24 H 0.185 0.815 25 H 0.192 0.808 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.315 -1.791 7.009 14.282 hybrid contribution -0.190 0.559 0.339 0.681 sum 12.125 -1.232 7.348 14.231 Atomic orbital electron populations 1.70057 1.07991 1.27986 1.52045 1.25911 0.95499 1.03402 0.93504 0.84914 0.75458 0.77779 0.78550 1.19268 1.26539 1.20295 1.21145 0.89801 0.93329 1.50302 0.93165 1.18889 0.94270 0.94514 0.90013 0.95463 1.22270 1.00718 0.94512 0.96313 1.20900 1.02532 0.92058 0.94323 1.21792 1.00279 0.98396 0.95949 1.21474 0.95776 0.97190 0.94729 1.22279 1.02537 0.93170 1.01580 1.23011 0.94832 1.01650 0.88854 1.66580 1.15848 1.19699 1.22117 1.22866 0.91891 0.88561 0.99649 0.92716 0.90666 0.89895 0.87662 0.90780 0.81479 0.80806 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.57 13.96 21.45 0.30 -61.27 15 2 C 0.02 0.95 5.45 84.65 0.46 1.41 15 3 Si 1.00 54.49 23.62 68.60 1.62 56.11 15 4 H -0.27 -14.10 5.99 99.48 0.60 -13.51 15 5 H -0.33 -18.26 7.11 99.48 0.71 -17.55 15 6 H -0.28 -14.97 6.45 99.48 0.64 -14.33 15 7 C -0.51 -29.96 9.09 25.60 0.23 -29.73 15 8 H 0.05 3.15 7.82 -2.92 -0.02 3.13 15 9 C 0.04 2.10 2.34 -11.58 -0.03 2.07 15 10 H 0.03 1.40 7.18 -2.39 -0.02 1.39 15 11 C -0.10 -3.73 6.60 31.60 0.21 -3.52 15 12 C -0.06 -1.97 6.76 30.56 0.21 -1.77 15 13 C -0.16 -6.03 6.16 -19.59 -0.12 -6.15 15 14 C -0.07 -1.93 10.17 22.47 0.23 -1.70 15 15 C -0.18 -4.96 10.12 22.35 0.23 -4.73 15 16 C 0.07 2.60 10.99 84.71 0.93 3.53 15 17 N -0.53 -24.64 5.05 -182.97 -0.92 -25.57 15 18 C 0.11 4.92 5.81 42.72 0.25 5.17 15 19 H 0.26 16.38 8.31 -92.71 -0.77 15.61 15 20 H 0.07 2.80 7.74 -2.39 -0.02 2.78 15 21 H 0.08 2.59 8.14 -2.38 -0.02 2.57 15 22 H 0.11 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.17 3.34 8.06 -2.91 -0.02 3.32 15 25 H 0.17 3.19 8.06 -2.91 -0.02 3.17 15 26 H 0.17 4.94 8.06 -2.91 -0.02 4.92 15 Total: -1.00 -74.30 215.32 4.58 -69.72 By element: Atomic # 1 Polarization: -4.55 SS G_CDS: 0.99 Total: -3.56 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 2.60 Total: -35.43 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -0.62 Total: -86.84 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 1.62 Total: 56.11 kcal Total: -74.30 4.58 -69.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950559.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.488 kcal (2) G-P(sol) polarization free energy of solvation -74.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds