Wall clock time and date at job start Mon Mar 30 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86793 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47216 * 239.99731 * 3 2 1 5 5 H 1.48500 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47243 * 119.99328 * 3 2 1 7 7 C 1.39986 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99580 * 179.97438 * 7 2 1 9 9 C 1.39544 * 119.99900 * 0.02562 * 7 2 1 10 10 N 1.33576 * 125.63301 * 359.97188 * 9 7 2 11 11 C 1.31994 * 109.87685 * 179.97438 * 10 9 7 12 12 C 1.39835 * 108.04464 * 359.97438 * 11 10 9 13 13 C 1.39920 * 133.89281 * 180.29202 * 12 11 10 14 14 C 1.36805 * 119.02326 * 180.09951 * 13 12 11 15 15 C 1.39946 * 120.10262 * 359.60289 * 14 13 12 16 16 N 1.30822 * 121.04393 * 0.17949 * 15 14 13 17 17 N 1.37443 * 125.62886 * 179.97438 * 9 7 2 18 18 H 0.96996 * 120.00291 * 0.02562 * 1 2 3 19 19 H 1.08003 * 125.98014 * 179.97438 * 11 10 9 20 20 H 1.07991 * 120.49000 * 359.94959 * 13 12 11 21 21 H 1.08004 * 119.94588 * 179.78573 * 14 13 12 22 22 H 1.08000 * 119.47891 * 180.20787 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6964 -1.2124 5 1 1.2781 2.7464 -0.0006 6 1 3.0967 1.6965 1.2126 7 6 2.0090 -1.2123 0.0005 8 1 3.0890 -1.2122 0.0001 9 6 1.3113 -2.4208 0.0005 10 7 -0.0180 -2.5519 0.0006 11 6 -0.3428 -3.8312 0.0000 12 6 0.8393 -4.5782 -0.0010 13 6 1.1207 -5.9488 -0.0071 14 6 2.4260 -6.3584 -0.0041 15 6 3.4582 -5.4134 -0.0035 16 7 3.1989 -4.1311 -0.0023 17 7 1.8784 -3.6728 0.0005 18 1 -0.4850 0.8400 -0.0004 19 1 -1.3461 -4.2312 0.0003 20 1 0.3194 -6.6727 -0.0116 21 1 2.6602 -7.4127 -0.0052 22 1 4.4851 -5.7479 -0.0046 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260952876.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:04 Heat of formation + Delta-G solvation = 87.222242 kcal Electronic energy + Delta-G solvation = -10900.199897 eV Core-core repulsion = 8842.338312 eV Total energy + Delta-G solvation = -2057.861585 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.31486 -38.30102 -35.43693 -33.68508 -31.76406 -30.34511 -27.12768 -24.80908 -23.15346 -22.11649 -19.36879 -17.99802 -17.59548 -16.63207 -16.28740 -16.12341 -15.08614 -14.60363 -13.98353 -13.33791 -13.32010 -13.06515 -12.78689 -12.60733 -11.99468 -11.49109 -11.03670 -10.99061 -10.35982 -10.21513 -8.76432 -8.54346 -6.34156 0.04274 0.84330 1.38901 1.48723 1.53141 1.75765 2.24348 2.40306 2.79683 3.38764 3.95732 4.06664 4.26945 4.37420 4.54905 4.87643 5.10164 5.24422 5.31413 5.43663 5.80115 6.08970 6.21890 6.44169 6.78272 7.48970 7.79034 8.41021 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.064704 B = 0.012513 C = 0.010524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.633535 B = 2237.152348 C = 2659.942522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.031 3.969 3 Si 1.004 2.996 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.469 4.469 8 H 0.083 0.917 9 C 0.360 3.640 10 N -0.511 5.511 11 C 0.025 3.975 12 C -0.194 4.194 13 C 0.022 3.978 14 C -0.270 4.270 15 C 0.123 3.877 16 N -0.327 5.327 17 N -0.360 5.360 18 H 0.286 0.714 19 H 0.189 0.811 20 H 0.171 0.829 21 H 0.175 0.825 22 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 -6.958 -0.019 7.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.101 0.899 9 C 0.122 3.878 10 N -0.231 5.231 11 C -0.140 4.140 12 C -0.300 4.300 13 C -0.005 4.005 14 C -0.293 4.293 15 C -0.072 4.072 16 N -0.135 5.135 17 N -0.137 5.137 18 H 0.097 0.903 19 H 0.206 0.794 20 H 0.188 0.812 21 H 0.193 0.807 22 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.291 -5.234 -0.017 6.183 hybrid contribution 0.205 -0.740 -0.003 0.768 sum 3.496 -5.975 -0.019 6.923 Atomic orbital electron populations 1.70153 1.08727 1.30072 1.31270 1.26878 0.95882 1.04170 0.92056 0.84960 0.78351 0.74423 0.80046 1.18343 1.18374 1.18332 1.18557 0.94497 0.88532 1.49161 0.89876 1.20486 0.86745 0.83237 0.97314 1.71207 1.08976 1.17293 1.25604 1.23404 0.97360 0.89854 1.03332 1.20088 0.90622 0.92766 1.26565 1.20979 0.98953 0.91140 0.89472 1.21523 0.91737 1.01898 1.14163 1.24507 1.03072 0.87968 0.91677 1.75165 0.98533 1.18967 1.20862 1.47073 1.01888 1.07068 1.57673 0.90326 0.79417 0.81166 0.80716 0.76544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.91 11.86 21.84 0.26 -43.65 14 2 C 0.03 1.67 5.50 85.25 0.47 2.14 14 3 Si 1.00 40.14 29.56 68.60 2.03 42.17 14 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 14 5 H -0.26 -9.57 7.11 99.48 0.71 -8.87 14 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 14 7 C -0.47 -27.80 9.43 23.01 0.22 -27.59 14 8 H 0.08 4.80 7.85 -2.91 -0.02 4.78 14 9 C 0.36 21.94 7.57 133.33 1.01 22.95 14 10 N -0.51 -30.55 9.29 -191.89 -1.78 -32.33 14 11 C 0.02 1.25 12.01 85.06 1.02 2.27 14 12 C -0.19 -9.36 6.89 38.99 0.27 -9.09 14 13 C 0.02 0.77 10.12 22.34 0.23 0.99 14 14 C -0.27 -8.21 10.05 22.35 0.22 -7.99 14 15 C 0.12 4.26 11.29 85.26 0.96 5.23 14 16 N -0.33 -15.65 11.95 -56.98 -0.68 -16.33 14 17 N -0.36 -19.77 4.10 -185.60 -0.76 -20.53 14 18 H 0.29 14.43 8.30 -92.71 -0.77 13.66 14 19 H 0.19 7.59 8.06 -2.91 -0.02 7.57 14 20 H 0.17 4.37 8.06 -2.92 -0.02 4.35 14 21 H 0.18 3.46 8.06 -2.91 -0.02 3.44 14 22 H 0.22 4.97 8.06 -2.91 -0.02 4.95 14 Total: -1.00 -75.22 209.31 4.69 -70.53 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.23 Total: 11.23 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 4.40 Total: -11.09 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -2.97 Total: -112.84 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -75.22 4.69 -70.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952876.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.753 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds