Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81395 * 103.00400 * 2 1 4 4 C 1.50699 * 110.43594 * 302.36973 * 3 2 1 5 5 H 1.07999 * 120.00206 * 126.09230 * 4 3 2 6 6 C 1.37878 * 119.99581 * 306.09124 * 4 3 2 7 7 N 1.31513 * 120.00352 * 352.62981 * 6 4 3 8 8 Si 1.86800 * 119.99889 * 172.62192 * 6 4 3 9 9 H 1.48498 * 109.47217 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47485 * 300.00596 * 8 6 4 11 11 H 1.48503 * 109.47083 * 60.00351 * 8 6 4 12 12 C 1.54809 * 110.60525 * 179.74390 * 3 2 1 13 13 C 1.54993 * 102.09397 * 220.38926 * 12 3 2 14 14 O 1.44386 * 103.49315 * 37.02136 * 13 12 3 15 15 C 1.43749 * 106.97161 * 319.94213 * 14 13 12 16 16 H 1.08997 * 109.47226 * 184.01912 * 1 2 3 17 17 H 1.09000 * 109.47119 * 304.02081 * 1 2 3 18 18 H 1.08998 * 109.46687 * 64.01689 * 1 2 3 19 19 H 0.96998 * 119.99742 * 354.75648 * 7 6 4 20 20 H 1.09003 * 110.90295 * 338.58509 * 12 3 2 21 21 H 1.08997 * 110.90521 * 102.18863 * 12 3 2 22 22 H 1.09001 * 110.61885 * 278.51876 * 13 12 3 23 23 H 1.09002 * 110.75551 * 155.58629 * 13 12 3 24 24 H 1.09001 * 109.87429 * 267.08291 * 15 14 13 25 25 H 1.08997 * 109.87324 * 145.93844 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 1.6040 2.4502 -1.1927 5 1 0.9770 3.3184 -1.0530 6 6 1.8388 1.9665 -2.4623 7 7 2.7142 1.0026 -2.6473 8 14 0.9135 2.6802 -3.9197 9 1 1.3436 1.9929 -5.1638 10 1 -0.5453 2.4827 -3.7247 11 1 1.2062 4.1319 -4.0291 12 6 3.7567 1.9722 0.0065 13 6 3.9216 3.1603 0.9880 14 8 2.9163 2.9087 1.9934 15 6 1.7471 2.4307 1.3073 16 1 -0.3633 -1.0251 0.0720 17 1 -0.3633 0.5750 0.8518 18 1 -0.3632 0.4502 -0.9238 19 1 3.2494 0.6842 -1.9036 20 1 4.2659 1.0844 0.3814 21 1 4.1181 2.2357 -0.9875 22 1 3.7296 4.1062 0.4815 23 1 4.9171 3.1593 1.4320 24 1 1.0838 3.2652 1.0799 25 1 1.2273 1.6995 1.9263 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955202.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = -72.673694 kcal Electronic energy + Delta-G solvation = -10369.129248 eV Core-core repulsion = 8472.911167 eV Total energy + Delta-G solvation = -1896.218082 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.21519 -35.72811 -32.08072 -30.71403 -29.18806 -26.45429 -23.69184 -22.04377 -19.42020 -17.70876 -16.74204 -16.13557 -15.78361 -15.49728 -15.17402 -14.45957 -14.15477 -13.98320 -13.51952 -12.74296 -12.57144 -12.43258 -12.10574 -11.91864 -11.88617 -11.26061 -10.77796 -10.44276 -10.27799 -8.82375 -7.97944 -6.36932 1.26583 1.55884 1.61013 1.79989 2.06941 2.54869 3.05234 3.25966 3.91452 4.12925 4.25707 4.37082 4.45323 4.48102 4.59523 4.76430 4.81198 4.95157 4.97792 5.17298 5.66576 6.01375 6.09119 6.58176 7.41288 8.77984 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.038512 B = 0.019611 C = 0.016148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.880735 B = 1427.410477 C = 1733.593455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 S -0.384 6.384 3 C 0.077 3.923 4 C -0.597 4.597 5 H 0.054 0.946 6 C -0.006 4.006 7 N -0.885 5.885 8 Si 1.104 2.896 9 H -0.287 1.287 10 H -0.274 1.274 11 H -0.271 1.271 12 C -0.126 4.126 13 C 0.063 3.937 14 O -0.396 6.396 15 C 0.071 3.929 16 H 0.100 0.900 17 H 0.074 0.926 18 H 0.060 0.940 19 H 0.280 0.720 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.113 0.887 24 H 0.055 0.945 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 2.586 3.478 4.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 S -0.153 6.153 3 C -0.030 4.030 4 C -0.639 4.639 5 H 0.072 0.928 6 C -0.214 4.214 7 N -0.518 5.518 8 Si 0.926 3.074 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.196 1.196 12 C -0.166 4.166 13 C -0.014 4.014 14 O -0.315 6.315 15 C -0.008 4.008 16 H 0.119 0.881 17 H 0.093 0.907 18 H 0.079 0.921 19 H 0.092 0.908 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.131 0.869 24 H 0.073 0.927 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.534 1.477 2.132 3.013 hybrid contribution -0.515 0.887 1.253 1.619 sum -2.049 2.365 3.384 4.609 Atomic orbital electron populations 1.22958 0.92533 1.05060 1.04102 1.86251 1.10443 1.21242 1.97370 1.21725 0.95265 0.89495 0.96535 1.22055 1.33839 1.15822 0.92165 0.92754 1.26890 0.96876 0.94948 1.02696 1.70708 1.19731 1.24431 1.36958 0.83091 0.75409 0.75858 0.73000 1.21217 1.20000 1.19636 1.23027 0.95877 0.97937 0.99798 1.23532 0.92754 0.96736 0.88421 1.88692 1.24608 1.86290 1.31931 1.23537 0.87996 0.97245 0.92008 0.88142 0.90721 0.92103 0.90786 0.93079 0.91644 0.91993 0.86896 0.92709 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.09 10.18 113.37 1.15 -1.94 15 2 S -0.38 -18.32 18.74 -56.49 -1.06 -19.38 15 3 C 0.08 3.65 0.48 -10.55 -0.01 3.65 15 4 C -0.60 -30.62 7.37 25.60 0.19 -30.43 15 5 H 0.05 2.78 7.37 -2.91 -0.02 2.76 15 6 C -0.01 -0.33 4.96 84.66 0.42 0.09 15 7 N -0.88 -50.11 12.68 21.45 0.27 -49.84 15 8 Si 1.10 46.89 29.91 68.60 2.05 48.94 15 9 H -0.29 -12.43 7.11 99.48 0.71 -11.72 15 10 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 12 C -0.13 -5.70 5.09 31.89 0.16 -5.53 15 13 C 0.06 2.39 7.72 72.66 0.56 2.95 15 14 O -0.40 -16.49 11.52 -148.98 -1.72 -18.20 15 15 C 0.07 3.05 6.80 72.36 0.49 3.54 15 16 H 0.10 3.41 8.14 -2.39 -0.02 3.40 15 17 H 0.07 2.67 7.43 -2.39 -0.02 2.65 15 18 H 0.06 2.59 7.93 -2.39 -0.02 2.57 15 19 H 0.28 16.01 4.77 -92.71 -0.44 15.57 15 20 H 0.05 2.31 7.84 -2.39 -0.02 2.29 15 21 H 0.06 3.20 6.76 -2.39 -0.02 3.19 15 22 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 23 H 0.11 3.52 8.14 -2.39 -0.02 3.50 15 24 H 0.05 2.33 7.40 -2.39 -0.02 2.31 15 25 H 0.08 3.17 6.97 -2.39 -0.02 3.15 15 Total: -1.00 -58.56 217.68 4.02 -54.54 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.49 Total: 11.61 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 2.97 Total: -27.66 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.27 Total: -49.84 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.72 Total: -18.20 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.05 Total: 48.94 kcal Atomic # 16 Polarization: -18.32 SS G_CDS: -1.06 Total: -19.38 kcal Total: -58.56 4.02 -54.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955202.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.130 kcal (2) G-P(sol) polarization free energy of solvation -58.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds