Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 103.00069 * 2 1 4 4 C 1.50696 * 110.45781 * 60.66531 * 3 2 1 5 5 H 1.08006 * 119.99992 * 241.46000 * 4 3 2 6 6 C 1.37870 * 120.00413 * 61.45164 * 4 3 2 7 7 N 1.31519 * 120.00138 * 3.70011 * 6 4 3 8 8 Si 1.86803 * 120.00200 * 183.69567 * 6 4 3 9 9 H 1.48499 * 109.47359 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47137 * 300.00048 * 8 6 4 11 11 H 1.48496 * 109.47305 * 60.00108 * 8 6 4 12 12 C 1.54512 * 110.50765 * 183.26274 * 3 2 1 13 13 C 1.54482 * 104.06220 * 118.78379 * 12 3 2 14 14 O 1.44430 * 104.79978 * 23.97550 * 13 12 3 15 15 C 1.44422 * 105.28031 * 319.49022 * 14 13 12 16 16 H 1.09000 * 109.47029 * 183.85976 * 1 2 3 17 17 H 1.09001 * 109.46810 * 303.85305 * 1 2 3 18 18 H 1.08994 * 109.47291 * 63.85386 * 1 2 3 19 19 H 0.96998 * 119.99616 * 355.06413 * 7 6 4 20 20 H 1.08995 * 110.51362 * 237.42280 * 12 3 2 21 21 H 1.08998 * 110.51593 * 0.13775 * 12 3 2 22 22 H 1.08996 * 110.37540 * 142.80615 * 13 12 3 23 23 H 1.09004 * 110.37413 * 265.14994 * 13 12 3 24 24 H 1.09002 * 110.37035 * 281.68451 * 15 14 13 25 25 H 1.08988 * 110.37526 * 159.34018 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 1.6666 2.4363 1.2309 5 1 0.9383 3.2278 1.1332 6 6 2.0879 2.0377 2.4817 7 7 3.0274 1.1248 2.5992 8 14 1.3243 2.7942 4.0095 9 1 1.9468 2.2003 5.2199 10 1 1.5553 4.2611 4.0038 11 1 -0.1356 2.5230 4.0194 12 6 3.7517 1.9698 -0.0824 13 6 3.9566 2.7511 -1.3992 14 8 2.6962 3.4165 -1.6334 15 6 1.6837 2.4503 -1.2768 16 1 -0.3633 -1.0253 0.0692 17 1 -0.3633 0.5725 0.8535 18 1 -0.3633 0.4528 -0.9224 19 1 3.3733 0.6805 1.8094 20 1 4.1060 2.5537 0.7671 21 1 4.2625 1.0079 -0.1255 22 1 4.7566 3.4826 -1.2859 23 1 4.1811 2.0654 -2.2163 24 1 1.5598 1.7185 -2.0750 25 1 0.7380 2.9507 -1.0694 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260955203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -56.058175 kcal Electronic energy + Delta-G solvation = -10356.392993 eV Core-core repulsion = 8460.895414 eV Total energy + Delta-G solvation = -1895.497579 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.45194 -33.75458 -30.16888 -28.99512 -27.53411 -24.47402 -22.01286 -20.12348 -17.34298 -15.89281 -15.21760 -14.42481 -13.98396 -13.84414 -12.88507 -12.69097 -12.50591 -12.40195 -11.48083 -11.05356 -10.79883 -10.68233 -10.53994 -10.16287 -9.92626 -9.47092 -8.91601 -8.49365 -8.43335 -6.76902 -6.12946 -4.25879 3.02933 3.37280 3.37725 3.56617 3.84858 4.39943 4.83379 5.31173 5.67192 5.80829 5.84264 5.95340 6.03751 6.10163 6.26390 6.42124 6.56751 6.58602 6.72003 7.11145 7.47941 7.89318 8.18573 8.69242 9.44919 10.87331 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.036931 B = 0.019707 C = 0.016226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.990907 B = 1420.496154 C = 1725.165724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 S -0.363 6.363 3 C 0.084 3.916 4 C -0.572 4.572 5 H 0.058 0.942 6 C 0.031 3.969 7 N -0.864 5.864 8 Si 1.066 2.934 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.287 1.287 12 C -0.122 4.122 13 C 0.050 3.950 14 O -0.379 6.379 15 C 0.064 3.936 16 H 0.074 0.926 17 H 0.077 0.923 18 H 0.054 0.946 19 H 0.289 0.711 20 H 0.084 0.916 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.701 0.759 -4.017 4.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 S -0.132 6.132 3 C -0.022 4.022 4 C -0.615 4.615 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.498 5.498 8 Si 0.893 3.107 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.213 1.213 12 C -0.162 4.162 13 C -0.028 4.028 14 O -0.298 6.298 15 C -0.015 4.015 16 H 0.093 0.907 17 H 0.096 0.904 18 H 0.073 0.927 19 H 0.103 0.897 20 H 0.103 0.897 21 H 0.077 0.923 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.955 0.006 -2.497 2.674 hybrid contribution -0.932 0.655 -1.550 1.924 sum -1.887 0.661 -4.048 4.515 Atomic orbital electron populations 1.22911 0.95630 1.03604 1.03801 1.86252 1.06983 1.22544 1.97391 1.21690 0.94406 0.89281 0.96801 1.21900 1.27925 1.20915 0.90801 0.92341 1.25803 0.94897 0.96321 1.01127 1.70640 1.21630 1.21571 1.35933 0.83587 0.75798 0.75741 0.75555 1.20504 1.21265 1.21301 1.22907 0.96561 0.99285 0.97476 1.23336 0.87340 0.95696 0.96407 1.88992 1.15521 1.37760 1.87546 1.23805 0.92066 0.90786 0.94805 0.90710 0.90420 0.92651 0.89687 0.89731 0.92323 0.90187 0.93530 0.93590 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 10.27 101.05 1.04 -0.79 15 2 S -0.36 -8.63 19.08 -107.50 -2.05 -10.68 15 3 C 0.08 2.04 0.54 -90.21 -0.05 1.99 15 4 C -0.57 -15.20 7.26 -34.44 -0.25 -15.45 15 5 H 0.06 1.56 7.55 -52.48 -0.40 1.17 15 6 C 0.03 0.83 4.96 -17.82 -0.09 0.74 15 7 N -0.86 -24.65 12.89 55.43 0.71 -23.94 15 8 Si 1.07 24.06 29.91 -169.99 -5.08 18.97 15 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 15 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 15 12 C -0.12 -2.81 4.76 -25.16 -0.12 -2.93 15 13 C 0.05 0.99 7.63 37.93 0.29 1.28 15 14 O -0.38 -8.43 11.65 -35.23 -0.41 -8.84 15 15 C 0.06 1.42 6.42 37.93 0.24 1.66 15 16 H 0.07 1.33 8.14 -51.92 -0.42 0.91 15 17 H 0.08 1.67 7.77 -51.92 -0.40 1.26 15 18 H 0.05 1.01 8.08 -51.93 -0.42 0.59 15 19 H 0.29 8.23 4.71 -40.82 -0.19 8.04 15 20 H 0.08 2.13 7.17 -51.93 -0.37 1.75 15 21 H 0.06 1.35 7.45 -51.93 -0.39 0.96 15 22 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.05 0.96 7.83 -51.93 -0.41 0.55 15 25 H 0.08 1.77 7.69 -51.94 -0.40 1.37 15 LS Contribution 219.37 15.07 3.31 3.31 Total: -1.00 -28.77 219.37 -5.50 -34.28 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.04 Total: 0.40 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 1.06 Total: -13.50 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.71 Total: -23.94 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.41 Total: -8.84 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.08 Total: 18.97 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -2.05 Total: -10.68 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.77 -5.50 -34.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.782 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds