Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 103.00069 * 2 1 4 4 C 1.50696 * 110.45781 * 60.66531 * 3 2 1 5 5 H 1.08006 * 119.99992 * 241.46000 * 4 3 2 6 6 C 1.37870 * 120.00413 * 61.45164 * 4 3 2 7 7 N 1.31519 * 120.00138 * 3.70011 * 6 4 3 8 8 Si 1.86803 * 120.00200 * 183.69567 * 6 4 3 9 9 H 1.48499 * 109.47359 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47137 * 300.00048 * 8 6 4 11 11 H 1.48496 * 109.47305 * 60.00108 * 8 6 4 12 12 C 1.54512 * 110.50765 * 183.26274 * 3 2 1 13 13 C 1.54482 * 104.06220 * 118.78379 * 12 3 2 14 14 O 1.44430 * 104.79978 * 23.97550 * 13 12 3 15 15 C 1.44422 * 105.28031 * 319.49022 * 14 13 12 16 16 H 1.09000 * 109.47029 * 183.85976 * 1 2 3 17 17 H 1.09001 * 109.46810 * 303.85305 * 1 2 3 18 18 H 1.08994 * 109.47291 * 63.85386 * 1 2 3 19 19 H 0.96998 * 119.99616 * 355.06413 * 7 6 4 20 20 H 1.08995 * 110.51362 * 237.42280 * 12 3 2 21 21 H 1.08998 * 110.51593 * 0.13775 * 12 3 2 22 22 H 1.08996 * 110.37540 * 142.80615 * 13 12 3 23 23 H 1.09004 * 110.37413 * 265.14994 * 13 12 3 24 24 H 1.09002 * 110.37035 * 281.68451 * 15 14 13 25 25 H 1.08988 * 110.37526 * 159.34018 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 1.6666 2.4363 1.2309 5 1 0.9383 3.2278 1.1332 6 6 2.0879 2.0377 2.4817 7 7 3.0274 1.1248 2.5992 8 14 1.3243 2.7942 4.0095 9 1 1.9468 2.2003 5.2199 10 1 1.5553 4.2611 4.0038 11 1 -0.1356 2.5230 4.0194 12 6 3.7517 1.9698 -0.0824 13 6 3.9566 2.7511 -1.3992 14 8 2.6962 3.4165 -1.6334 15 6 1.6837 2.4503 -1.2768 16 1 -0.3633 -1.0253 0.0692 17 1 -0.3633 0.5725 0.8535 18 1 -0.3633 0.4528 -0.9224 19 1 3.3733 0.6805 1.8094 20 1 4.1060 2.5537 0.7671 21 1 4.2625 1.0079 -0.1255 22 1 4.7566 3.4826 -1.2859 23 1 4.1811 2.0654 -2.2163 24 1 1.5598 1.7185 -2.0750 25 1 0.7380 2.9507 -1.0694 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -74.099687 kcal Electronic energy + Delta-G solvation = -10357.175331 eV Core-core repulsion = 8460.895414 eV Total energy + Delta-G solvation = -1896.279917 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.20411 -35.70002 -32.05189 -30.72728 -29.18665 -26.46594 -23.73388 -21.98285 -19.30606 -17.68623 -16.95496 -16.16577 -15.81513 -15.65373 -14.69410 -14.53000 -14.21891 -14.04742 -13.25582 -12.85124 -12.56478 -12.46113 -12.35963 -11.94916 -11.71586 -11.30653 -10.64640 -10.43805 -10.38018 -8.79894 -8.06832 -6.35494 1.24470 1.54680 1.60958 1.79467 2.04442 2.54397 3.12413 3.31508 3.91544 4.10847 4.19611 4.36714 4.44683 4.45744 4.52470 4.75483 4.78567 4.94038 4.95910 5.24760 5.74001 5.93119 6.10229 6.60506 7.42036 8.79340 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.036931 B = 0.019707 C = 0.016226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.990907 B = 1420.496154 C = 1725.165724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 S -0.389 6.389 3 C 0.075 3.925 4 C -0.588 4.588 5 H 0.050 0.950 6 C -0.008 4.008 7 N -0.895 5.895 8 Si 1.106 2.894 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.272 1.272 12 C -0.120 4.120 13 C 0.054 3.946 14 O -0.391 6.391 15 C 0.071 3.929 16 H 0.100 0.900 17 H 0.062 0.938 18 H 0.076 0.924 19 H 0.281 0.719 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.104 0.896 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 0.963 -4.746 5.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 S -0.158 6.158 3 C -0.031 4.031 4 C -0.630 4.630 5 H 0.068 0.932 6 C -0.215 4.215 7 N -0.530 5.530 8 Si 0.929 3.071 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.198 1.198 12 C -0.161 4.161 13 C -0.023 4.023 14 O -0.310 6.310 15 C -0.008 4.008 16 H 0.118 0.882 17 H 0.081 0.919 18 H 0.095 0.905 19 H 0.094 0.906 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.122 0.878 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.656 0.227 -3.239 3.645 hybrid contribution -0.733 0.550 -1.393 1.667 sum -2.389 0.777 -4.631 5.269 Atomic orbital electron populations 1.22977 0.92429 1.05276 1.04255 1.86282 1.10576 1.21525 1.97458 1.21756 0.95111 0.89091 0.97149 1.22098 1.27895 1.21064 0.91951 0.93172 1.26934 0.94577 0.96076 1.03901 1.70731 1.23416 1.23304 1.35589 0.83063 0.75812 0.75696 0.72576 1.21028 1.19975 1.19774 1.22805 0.95895 0.99062 0.98289 1.23467 0.87127 0.96397 0.95286 1.88976 1.16281 1.38253 1.87469 1.23740 0.92009 0.90912 0.94157 0.88174 0.91921 0.90461 0.90649 0.92550 0.92812 0.87790 0.91036 0.91949 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.08 10.27 113.37 1.16 -1.92 15 2 S -0.39 -18.06 19.08 -56.49 -1.08 -19.14 15 3 C 0.08 3.60 0.54 -10.53 -0.01 3.60 15 4 C -0.59 -31.08 7.26 25.60 0.19 -30.89 15 5 H 0.05 2.67 7.55 -2.91 -0.02 2.65 15 6 C -0.01 -0.44 4.96 84.65 0.42 -0.02 15 7 N -0.90 -51.60 12.89 21.45 0.28 -51.32 15 8 Si 1.11 48.21 29.91 68.60 2.05 50.27 15 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 15 11 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 12 C -0.12 -5.50 4.76 31.61 0.15 -5.35 15 13 C 0.05 2.05 7.63 72.49 0.55 2.60 15 14 O -0.39 -16.53 11.65 -148.98 -1.74 -18.27 15 15 C 0.07 2.99 6.42 72.48 0.47 3.46 15 16 H 0.10 3.29 8.14 -2.39 -0.02 3.27 15 17 H 0.06 2.58 7.77 -2.39 -0.02 2.56 15 18 H 0.08 2.59 8.08 -2.39 -0.02 2.57 15 19 H 0.28 16.21 4.71 -92.71 -0.44 15.77 15 20 H 0.06 2.86 7.17 -2.39 -0.02 2.85 15 21 H 0.05 2.47 7.45 -2.39 -0.02 2.45 15 22 H 0.10 3.41 8.14 -2.39 -0.02 3.39 15 23 H 0.07 2.37 8.14 -2.38 -0.02 2.35 15 24 H 0.06 2.43 7.83 -2.39 -0.02 2.41 15 25 H 0.08 3.42 7.69 -2.39 -0.02 3.40 15 Total: -1.00 -60.13 219.37 3.94 -56.18 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.49 Total: 10.80 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 2.93 Total: -28.52 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.28 Total: -51.32 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.74 Total: -18.27 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.05 Total: 50.27 kcal Atomic # 16 Polarization: -18.06 SS G_CDS: -1.08 Total: -19.14 kcal Total: -60.13 3.94 -56.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.916 kcal (2) G-P(sol) polarization free energy of solvation -60.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds