Wall clock time and date at job start Mon Mar 30 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31325 * 1 3 3 Si 1.86806 * 120.00240 * 2 1 4 4 H 1.48501 * 109.47184 * 270.00364 * 3 2 1 5 5 H 1.48501 * 109.46921 * 30.00047 * 3 2 1 6 6 H 1.48491 * 109.47130 * 149.99678 * 3 2 1 7 7 C 1.38990 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36965 * 119.99787 * 0.02562 * 7 2 1 10 10 N 1.39942 * 125.48661 * 0.02562 * 9 7 2 11 11 C 1.30574 * 110.10682 * 179.97438 * 10 9 7 12 12 C 1.45726 * 107.83365 * 0.02562 * 11 10 9 13 13 C 1.39975 * 135.10214 * 180.02562 * 12 11 10 14 14 C 1.36702 * 118.70334 * 179.97438 * 13 12 11 15 15 N 1.32283 * 121.40299 * 359.97112 * 14 13 12 16 16 C 1.31734 * 122.54529 * 0.03300 * 15 14 13 17 17 C 1.37470 * 125.48597 * 180.02562 * 9 7 2 18 18 H 0.97001 * 120.00171 * 359.97438 * 1 2 3 19 19 H 1.07999 * 126.07732 * 180.26261 * 11 10 9 20 20 H 1.08007 * 120.64560 * 359.97438 * 13 12 11 21 21 H 1.08004 * 119.29497 * 180.02562 * 14 13 12 22 22 H 1.07996 * 119.87587 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0465 -1.4001 5 1 1.4448 2.6527 0.7001 6 1 3.5448 1.4402 0.7001 7 6 2.0082 -1.2037 0.0005 8 1 3.0882 -1.2037 0.0001 9 7 1.3234 -2.3898 0.0005 10 7 -0.0697 -2.5236 -0.0005 11 6 -0.3993 -3.7870 -0.0007 12 6 0.8304 -4.5691 0.0008 13 6 1.1368 -5.9348 0.0009 14 6 2.4505 -6.3129 0.0021 15 7 3.4252 -5.4186 0.0026 16 6 3.1965 -4.1212 0.0026 17 6 1.8937 -3.6406 0.0015 18 1 -0.4850 0.8400 0.0004 19 1 -1.4044 -4.1821 -0.0055 20 1 0.3507 -6.6755 0.0000 21 1 2.6979 -7.3643 0.0017 22 1 4.0254 -3.4289 0.0035 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260988281.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:20 Heat of formation + Delta-G solvation = 99.079790 kcal Electronic energy + Delta-G solvation = -10898.984487 eV Core-core repulsion = 8841.637084 eV Total energy + Delta-G solvation = -2057.347403 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.15915 -37.10403 -33.69103 -31.47489 -29.81037 -28.92708 -25.22968 -22.72305 -21.47481 -20.67522 -17.69274 -16.30847 -15.75776 -14.94021 -14.53004 -14.00319 -13.52934 -13.26881 -12.34039 -12.06549 -11.95783 -11.27722 -11.14851 -10.84344 -10.47865 -9.82679 -9.26395 -8.98838 -8.71941 -8.03894 -7.35413 -6.74099 -4.29326 1.86440 2.45752 2.98457 2.99839 3.03961 3.67428 3.81605 4.27625 4.66936 5.00188 5.34506 5.63465 5.79493 5.97729 6.04592 6.46022 6.56607 6.72955 6.98039 7.02840 7.42259 7.69268 7.83472 8.40625 8.94286 9.06279 9.28378 10.22725 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.063830 B = 0.012600 C = 0.010562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.562450 B = 2221.719138 C = 2650.439798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.043 3.957 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.161 5.161 10 N -0.201 5.201 11 C -0.040 4.040 12 C -0.179 4.179 13 C -0.095 4.095 14 C -0.007 4.007 15 N -0.486 5.486 16 C 0.129 3.871 17 C -0.015 4.015 18 H 0.278 0.722 19 H 0.171 0.829 20 H 0.115 0.885 21 H 0.136 0.864 22 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -2.476 0.002 2.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.445 4.445 8 H 0.139 0.861 9 N 0.068 4.932 10 N -0.025 5.025 11 C -0.223 4.223 12 C -0.195 4.195 13 C -0.117 4.117 14 C -0.153 4.153 15 N -0.197 5.197 16 C -0.045 4.045 17 C -0.139 4.139 18 H 0.088 0.912 19 H 0.188 0.812 20 H 0.133 0.867 21 H 0.153 0.847 22 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.797 -1.492 0.007 2.335 hybrid contribution -0.385 0.220 -0.008 0.444 sum 1.412 -1.271 -0.001 1.900 Atomic orbital electron populations 1.70179 1.06214 1.28440 1.35433 1.25659 0.95823 1.00425 0.95479 0.85744 0.79481 0.79404 0.79176 1.19407 1.19956 1.18532 1.19998 0.92093 0.80454 1.51910 0.86055 1.44661 1.02266 1.02850 1.43389 1.77668 0.90604 1.16349 1.17850 1.24710 0.96996 0.90593 1.09987 1.19757 0.93018 0.93467 1.13241 1.21008 0.97075 0.93784 0.99852 1.21554 0.88700 0.97950 1.07127 1.67391 1.36649 1.01544 1.14078 1.21513 0.92390 0.91491 0.99092 1.19733 0.95807 0.86925 1.11394 0.91184 0.81183 0.86653 0.84693 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.59 11.76 55.50 0.65 -19.93 14 2 C 0.04 1.06 5.50 -17.49 -0.10 0.97 14 3 Si 0.94 18.35 29.55 -169.99 -5.02 13.32 14 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 14 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 14 7 C -0.31 -8.05 10.17 -14.98 -0.15 -8.20 14 8 H 0.12 2.83 7.83 -52.49 -0.41 2.41 14 9 N -0.16 -4.34 3.73 -9.50 -0.04 -4.37 14 10 N -0.20 -5.46 10.18 31.87 0.32 -5.13 14 11 C -0.04 -0.95 12.28 -15.10 -0.19 -1.13 14 12 C -0.18 -4.19 6.43 -105.15 -0.68 -4.86 14 13 C -0.09 -1.88 10.13 -39.49 -0.40 -2.28 14 14 C -0.01 -0.14 11.10 -17.91 -0.20 -0.34 14 15 N -0.49 -10.39 10.32 -13.40 -0.14 -10.53 14 16 C 0.13 2.88 11.19 -17.36 -0.19 2.69 14 17 C -0.01 -0.37 6.84 -84.00 -0.57 -0.94 14 18 H 0.28 6.72 8.31 -40.82 -0.34 6.38 14 19 H 0.17 3.29 8.06 -52.49 -0.42 2.86 14 20 H 0.12 1.87 8.06 -52.48 -0.42 1.44 14 21 H 0.14 2.15 8.06 -52.48 -0.42 1.73 14 22 H 0.14 2.83 8.06 -52.49 -0.42 2.40 14 LS Contribution 208.87 15.07 3.15 3.15 Total: -1.00 -29.79 208.87 -4.79 -34.58 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -1.24 Total: 3.03 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.48 Total: -14.10 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.80 Total: -39.97 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -29.79 -4.79 -34.58 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988281.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.657 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds