Wall clock time and date at job start Mon Mar 30 2020 02:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86798 * 120.00418 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00616 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00366 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00077 * 3 2 1 7 7 C 1.38945 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99757 * 179.97438 * 7 2 1 9 9 N 1.37020 * 120.00216 * 359.71982 * 7 2 1 10 10 N 1.39946 * 125.48608 * 0.02576 * 9 7 2 11 11 C 1.30510 * 110.12397 * 180.02562 * 10 9 7 12 12 C 1.45922 * 107.82979 * 359.97438 * 11 10 9 13 13 C 1.39573 * 134.79981 * 180.02562 * 12 11 10 14 14 N 1.31633 * 120.13586 * 179.22032 * 13 12 11 15 15 C 1.32335 * 122.31868 * 0.69569 * 14 13 12 16 16 C 1.37818 * 121.46694 * 359.53182 * 15 14 13 17 17 C 1.37165 * 125.48509 * 179.72166 * 9 7 2 18 18 H 0.97001 * 119.99549 * 359.97438 * 1 2 3 19 19 H 1.08002 * 126.08096 * 180.02562 * 11 10 9 20 20 H 1.07994 * 119.93021 * 359.95042 * 13 12 11 21 21 H 1.08001 * 119.26564 * 179.56064 * 15 14 13 22 22 H 1.07996 * 120.57474 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0464 -1.4000 5 1 1.4452 2.6526 0.7002 6 1 3.5453 1.4400 0.7000 7 6 2.0083 -1.2033 -0.0005 8 1 3.0883 -1.2034 -0.0010 9 7 1.3231 -2.3899 0.0047 10 7 -0.0699 -2.5237 0.0104 11 6 -0.3997 -3.7864 0.0150 12 6 0.8314 -4.5698 0.0118 13 6 1.1294 -5.9333 0.0136 14 7 2.3825 -6.3359 -0.0060 15 6 3.3981 -5.4876 -0.0143 16 6 3.1967 -4.1242 -0.0124 17 6 1.8922 -3.6380 -0.0006 18 1 -0.4849 0.8401 0.0004 19 1 -1.4050 -4.1812 0.0195 20 1 0.3302 -6.6596 0.0192 21 1 4.4073 -5.8722 -0.0233 22 1 4.0362 -3.4449 -0.0197 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260988917.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:38 Heat of formation + Delta-G solvation = 77.535639 kcal Electronic energy + Delta-G solvation = -10895.498418 eV Core-core repulsion = 8837.216791 eV Total energy + Delta-G solvation = -2058.281627 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.92109 -38.79297 -35.45503 -33.29625 -31.36251 -30.79006 -27.16025 -24.35095 -23.19395 -22.47372 -19.51058 -18.14083 -17.30877 -16.46106 -16.27657 -15.80287 -15.16312 -15.01870 -14.27844 -13.80948 -13.58577 -12.93515 -12.87003 -12.29116 -12.11145 -11.52969 -11.22781 -10.87182 -10.26976 -9.59482 -9.30432 -8.55264 -6.23147 0.17881 0.80398 1.34734 1.43009 1.51755 1.99702 2.01893 2.50278 2.90588 3.25345 3.80646 4.00531 4.09788 4.27946 4.46606 4.77459 4.89859 5.10357 5.12478 5.36418 5.67893 5.97713 6.06782 6.58748 7.25336 7.32642 7.43968 8.45186 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.064032 B = 0.012538 C = 0.010524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.175404 B = 2232.588692 C = 2659.908126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.003 4.003 3 Si 1.015 2.985 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.357 4.357 8 H 0.127 0.873 9 N -0.204 5.204 10 N -0.254 5.254 11 C -0.008 4.008 12 C -0.271 4.271 13 C 0.188 3.812 14 N -0.545 5.545 15 C 0.084 3.916 16 C -0.186 4.186 17 C 0.037 3.963 18 H 0.279 0.721 19 H 0.214 0.786 20 H 0.185 0.815 21 H 0.181 0.819 22 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -3.344 0.029 4.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.213 4.213 3 Si 0.834 3.166 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.487 4.487 8 H 0.144 0.856 9 N 0.025 4.975 10 N -0.074 5.074 11 C -0.197 4.197 12 C -0.284 4.284 13 C 0.019 3.981 14 N -0.257 5.257 15 C -0.063 4.063 16 C -0.210 4.210 17 C -0.090 4.090 18 H 0.089 0.911 19 H 0.231 0.769 20 H 0.202 0.798 21 H 0.198 0.802 22 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.067 -2.736 0.026 4.110 hybrid contribution 0.184 1.058 -0.008 1.074 sum 3.250 -1.679 0.019 3.658 Atomic orbital electron populations 1.70327 1.07906 1.29232 1.38129 1.26706 0.96641 1.03722 0.94277 0.84643 0.78242 0.74397 0.79318 1.18831 1.19534 1.17456 1.20376 0.92675 0.81319 1.54325 0.85587 1.44778 1.02296 1.03703 1.46716 1.77533 0.91594 1.18699 1.19541 1.25545 0.98988 0.89674 1.05498 1.20958 0.93019 0.96102 1.18315 1.22604 0.94268 0.90998 0.90272 1.67662 0.99781 1.38989 1.19266 1.22618 0.98969 0.87876 0.96811 1.21067 0.93288 0.97484 1.09174 1.19470 0.96374 0.86450 1.06684 0.91145 0.76922 0.79829 0.80190 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.03 11.76 21.66 0.25 -45.78 14 2 C 0.00 -0.14 5.50 84.93 0.47 0.33 14 3 Si 1.02 38.81 29.55 68.60 2.03 40.84 14 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 14 5 H -0.27 -10.03 7.11 99.48 0.71 -9.33 14 6 H -0.25 -8.98 7.11 99.48 0.71 -8.27 14 7 C -0.36 -19.40 10.17 84.05 0.85 -18.55 14 8 H 0.13 6.26 7.83 -2.91 -0.02 6.24 14 9 N -0.20 -11.42 3.73 -183.86 -0.69 -12.11 14 10 N -0.25 -14.07 10.18 -52.96 -0.54 -14.61 14 11 C -0.01 -0.38 12.29 86.88 1.07 0.69 14 12 C -0.27 -12.15 6.41 -20.24 -0.13 -12.28 14 13 C 0.19 6.98 11.28 85.05 0.96 7.94 14 14 N -0.54 -20.44 10.33 -194.90 -2.01 -22.46 14 15 C 0.08 3.04 11.15 84.52 0.94 3.98 14 16 C -0.19 -7.77 10.08 22.41 0.23 -7.54 14 17 C 0.04 1.85 6.85 39.27 0.27 2.12 14 18 H 0.28 14.18 8.31 -92.71 -0.77 13.41 14 19 H 0.21 7.47 8.06 -2.91 -0.02 7.45 14 20 H 0.18 5.15 8.06 -2.91 -0.02 5.13 14 21 H 0.18 4.93 8.06 -2.91 -0.02 4.91 14 22 H 0.13 4.94 8.06 -2.91 -0.02 4.91 14 Total: -1.00 -66.92 208.95 4.93 -61.98 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.23 Total: 15.44 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 4.66 Total: -23.31 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -2.98 Total: -94.95 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -66.92 4.93 -61.98 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988917.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.518 kcal (2) G-P(sol) polarization free energy of solvation -66.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds