Wall clock time and date at job start Mon Mar 30 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39545 * 120.64638 * 327.95371 * 3 2 1 5 5 N 1.31657 * 120.62991 * 180.26748 * 4 3 2 6 6 C 1.32157 * 122.14201 * 359.73482 * 5 4 3 7 7 C 1.37824 * 121.23354 * 0.02562 * 6 5 4 8 8 C 1.39543 * 119.20349 * 359.97438 * 7 6 5 9 9 N 1.38424 * 120.96013 * 179.97438 * 8 7 6 10 10 C 1.36814 * 120.00166 * 359.97438 * 9 8 7 11 11 H 1.08002 * 120.00288 * 0.02562 * 10 9 8 12 12 C 1.38884 * 120.00031 * 179.72397 * 10 9 8 13 13 N 1.31514 * 120.00061 * 0.27937 * 12 10 9 14 14 Si 1.86798 * 120.00333 * 180.28119 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99649 * 14 12 10 16 16 H 1.48501 * 109.47293 * 210.00099 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99897 * 14 12 10 18 18 H 1.08005 * 119.68292 * 359.97438 * 4 3 2 19 19 H 1.08004 * 119.38179 * 180.02562 * 6 5 4 20 20 H 1.08002 * 120.40204 * 180.02562 * 7 6 5 21 21 H 0.97000 * 120.00151 * 180.02562 * 9 8 7 22 22 H 0.96996 * 120.00393 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2798 -1.0166 0.6370 5 7 4.5964 -1.0129 0.6413 6 6 5.2987 -0.0638 0.0477 7 6 4.6803 0.9776 -0.6100 8 6 3.2862 1.0268 -0.6479 9 7 2.6275 2.0564 -1.2977 10 6 3.3439 3.0454 -1.9144 11 1 4.4235 3.0227 -1.8947 12 6 2.6830 4.0752 -2.5713 13 7 1.3684 4.1027 -2.5957 14 14 3.6612 5.4214 -3.4201 15 1 3.9268 5.0281 -4.8272 16 1 2.8843 6.6868 -3.3979 17 1 4.9502 5.6193 -2.7097 18 1 2.7455 -1.8121 1.1353 19 1 6.3775 -0.1050 0.0786 20 1 5.2675 1.7460 -1.0909 21 1 1.6578 2.0771 -1.3152 22 1 0.9067 4.8222 -3.0541 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993438.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:50 Heat of formation + Delta-G solvation = 54.217444 kcal Electronic energy + Delta-G solvation = -10553.807065 eV Core-core repulsion = 8494.514285 eV Total energy + Delta-G solvation = -2059.292780 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.28836 -36.03920 -35.57058 -32.59797 -30.56880 -29.31333 -25.32703 -23.57282 -21.62065 -18.64418 -17.79121 -16.90942 -15.41788 -14.85940 -13.88438 -13.67399 -13.57062 -13.44739 -12.39977 -12.24801 -12.07718 -11.94042 -11.74835 -11.09682 -11.00277 -10.61571 -10.45918 -9.26197 -8.64438 -8.31925 -7.43011 -6.95446 -4.18065 1.63699 2.39371 2.98236 3.00205 3.02655 3.46978 3.75730 3.81828 4.55949 4.78483 4.88619 4.99462 5.28139 5.62774 6.12625 6.28512 6.55223 6.67938 6.87374 7.00753 7.28963 7.58116 8.28737 8.37257 8.85845 8.94099 9.03482 10.18293 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.043070 B = 0.012216 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.943750 B = 2291.582878 C = 2931.680222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.277 3.723 3 C -0.231 4.231 4 C 0.204 3.796 5 N -0.576 5.576 6 C 0.136 3.864 7 C -0.253 4.253 8 C 0.237 3.763 9 N -0.510 5.510 10 C -0.315 4.315 11 H 0.114 0.886 12 C 0.029 3.971 13 N -0.868 5.868 14 Si 0.942 3.058 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.263 1.263 18 H 0.142 0.858 19 H 0.140 0.860 20 H 0.129 0.871 21 H 0.404 0.596 22 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 -1.604 1.019 6.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.035 4.035 3 C -0.248 4.248 4 C 0.041 3.959 5 N -0.293 5.293 6 C -0.012 4.012 7 C -0.280 4.280 8 C 0.101 3.899 9 N -0.106 5.106 10 C -0.446 4.446 11 H 0.132 0.868 12 C -0.178 4.178 13 N -0.502 5.502 14 Si 0.767 3.233 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.187 1.187 18 H 0.160 0.840 19 H 0.157 0.843 20 H 0.147 0.853 21 H 0.240 0.760 22 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.612 -1.791 1.143 5.078 hybrid contribution -0.161 1.497 -0.961 1.786 sum 4.451 -0.295 0.182 4.465 Atomic orbital electron populations 1.81140 1.12276 1.09536 1.12255 1.25611 0.92522 0.92962 0.92420 1.16145 0.84358 1.04574 1.19694 1.22200 0.89913 0.93128 0.90696 1.67622 1.06931 1.28720 1.26036 1.22203 0.99020 0.88950 0.91063 1.21270 0.92485 1.03701 1.10511 1.17720 0.91841 0.87704 0.92609 1.41145 1.09167 1.18112 1.42175 1.19967 0.93359 1.01291 1.29952 0.86836 1.25561 0.95975 0.99243 0.97058 1.69669 1.07345 1.33439 1.39714 0.85664 0.79277 0.78904 0.79490 1.19665 1.20292 1.18721 0.84044 0.84307 0.85281 0.75975 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.53 18.54 41.84 0.78 -9.75 14 2 C 0.28 5.82 14.26 -22.47 -0.32 5.50 14 3 C -0.23 -4.62 5.77 -106.43 -0.61 -5.23 14 4 C 0.20 3.64 10.92 -17.14 -0.19 3.45 14 5 N -0.58 -10.47 10.34 -12.99 -0.13 -10.60 14 6 C 0.14 2.34 11.15 -17.56 -0.20 2.14 14 7 C -0.25 -4.80 9.36 -39.25 -0.37 -5.17 14 8 C 0.24 5.05 6.66 -83.35 -0.56 4.49 14 9 N -0.51 -12.03 5.35 -9.21 -0.05 -12.08 14 10 C -0.32 -7.46 9.57 -15.09 -0.14 -7.60 14 11 H 0.11 2.48 5.75 -52.49 -0.30 2.17 14 12 C 0.03 0.70 5.50 -17.45 -0.10 0.60 14 13 N -0.87 -22.13 13.05 55.49 0.72 -21.40 14 14 Si 0.94 18.16 29.55 -169.99 -5.02 13.14 14 15 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 16 H -0.28 -5.39 7.11 56.52 0.40 -4.99 14 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 18 H 0.14 2.11 8.06 -52.48 -0.42 1.69 14 19 H 0.14 1.92 8.06 -52.48 -0.42 1.49 14 20 H 0.13 2.33 6.08 -52.49 -0.32 2.01 14 21 H 0.40 10.15 6.86 -40.82 -0.28 9.87 14 22 H 0.28 6.77 8.31 -40.82 -0.34 6.43 14 LS Contribution 214.46 15.07 3.23 3.23 Total: -1.00 -26.04 214.46 -3.84 -29.87 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -0.88 Total: 9.41 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.48 Total: -1.82 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 1.32 Total: -53.84 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -26.04 -3.84 -29.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993438.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.092 kcal (2) G-P(sol) polarization free energy of solvation -26.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds