Wall clock time and date at job start Mon Mar 30 2020 01:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.35164 * 2 1 4 4 S 1.83094 * 110.40003 * 122.32366 * 2 1 3 5 5 C 1.83458 * 97.47275 * 121.07780 * 4 2 1 6 6 C 1.55132 * 102.20607 * 22.89881 * 5 4 2 7 7 C 1.54018 * 106.98778 * 317.93551 * 6 5 4 8 8 H 1.08991 * 109.57850 * 287.25662 * 7 6 5 9 9 O 1.42900 * 109.72901 * 167.03758 * 7 6 5 10 10 C 1.34925 * 116.99432 * 90.53669 * 9 7 6 11 11 H 1.08002 * 120.00106 * 359.97438 * 10 9 7 12 12 C 1.38633 * 120.00124 * 179.97438 * 10 9 7 13 13 N 1.31584 * 119.99739 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00244 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47213 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47176 * 120.00110 * 14 12 10 17 17 H 1.48505 * 109.47007 * 239.99670 * 14 12 10 18 18 H 1.08996 * 109.47202 * 300.70155 * 1 2 3 19 19 H 1.08998 * 109.46951 * 60.70272 * 1 2 3 20 20 H 1.09005 * 109.46741 * 180.69918 * 1 2 3 21 21 H 1.09004 * 110.85891 * 141.07852 * 5 4 2 22 22 H 1.08998 * 110.85688 * 264.51177 * 5 4 2 23 23 H 1.09004 * 109.97895 * 77.24633 * 6 5 4 24 24 H 1.09005 * 109.97930 * 198.48187 * 6 5 4 25 25 H 0.97006 * 120.00073 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 16 2.1683 -0.9176 1.4502 5 6 3.1315 -2.1787 0.5296 6 6 3.3825 -1.4725 -0.8287 7 6 2.0678 -0.7732 -1.2220 8 1 1.3366 -1.5188 -1.5339 9 8 2.3084 0.1368 -2.2973 10 6 2.1719 -0.3456 -3.5499 11 1 1.8927 -1.3775 -3.7038 12 6 2.3899 0.4833 -4.6395 13 7 2.7296 1.7407 -4.4521 14 14 2.2002 -0.1843 -6.3738 15 1 1.8142 -1.6170 -6.3133 16 1 1.1476 0.5828 -7.0872 17 1 3.4887 -0.0496 -7.0998 18 1 -0.3633 0.5247 0.8836 19 1 -0.3633 0.5029 -0.8962 20 1 -0.3633 -1.0277 0.0125 21 1 4.0730 -2.3933 1.0352 22 1 2.5489 -3.0900 0.3950 23 1 4.1780 -0.7347 -0.7235 24 1 3.6548 -2.2078 -1.5860 25 1 2.8818 2.3208 -5.2144 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034569.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:37 Heat of formation + Delta-G solvation = -67.171522 kcal Electronic energy + Delta-G solvation = -9947.696728 eV Core-core repulsion = 8051.717239 eV Total energy + Delta-G solvation = -1895.979490 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.21573 -35.69618 -33.53561 -32.79400 -27.52176 -26.03272 -24.00513 -21.71769 -19.86596 -17.85892 -17.15100 -16.28947 -15.82920 -15.27296 -15.08824 -14.31919 -14.01632 -13.60184 -13.47464 -13.11186 -13.01053 -12.65008 -12.11667 -12.10685 -11.89878 -11.41620 -11.23139 -10.96483 -10.18658 -8.73812 -8.19553 -5.89569 0.79834 1.31353 1.41002 1.45174 1.55769 2.31999 3.14013 3.41864 3.69552 3.89626 4.02197 4.14955 4.37353 4.42037 4.62571 4.70046 4.79043 4.93581 5.00465 5.12685 5.17805 5.24282 6.18805 7.23425 7.99435 9.04875 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.066929 B = 0.010803 C = 0.010170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.251512 B = 2591.344081 C = 2752.434339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.037 4.037 3 H 0.081 0.919 4 S -0.305 6.305 5 C -0.053 4.053 6 C -0.145 4.145 7 C 0.086 3.914 8 H 0.054 0.946 9 O -0.317 6.317 10 C -0.373 4.373 11 H 0.075 0.925 12 C -0.040 4.040 13 N -0.939 5.939 14 Si 1.003 2.997 15 H -0.256 1.256 16 H -0.277 1.277 17 H -0.277 1.277 18 H 0.075 0.925 19 H 0.055 0.945 20 H 0.072 0.928 21 H 0.123 0.877 22 H 0.108 0.892 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -8.058 6.649 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 H 0.099 0.901 4 S -0.079 6.079 5 C -0.200 4.200 6 C -0.184 4.184 7 C 0.026 3.974 8 H 0.072 0.928 9 O -0.233 6.233 10 C -0.452 4.452 11 H 0.093 0.907 12 C -0.234 4.234 13 N -0.584 5.584 14 Si 0.826 3.174 15 H -0.179 1.179 16 H -0.203 1.203 17 H -0.203 1.203 18 H 0.094 0.906 19 H 0.074 0.926 20 H 0.091 0.909 21 H 0.141 0.859 22 H 0.127 0.873 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.806 -7.583 7.797 11.025 hybrid contribution 0.202 -0.170 -2.029 2.046 sum -1.605 -7.754 5.768 9.796 Atomic orbital electron populations 1.21759 0.90866 1.03161 1.02247 1.23663 0.99981 1.00744 0.92213 0.90066 1.87151 1.65788 1.38384 1.16592 1.24158 1.02741 0.97716 0.95431 1.22954 0.98869 0.99854 0.96695 1.22985 0.95272 0.91144 0.88047 0.92795 1.85667 1.88782 1.36050 1.12766 1.21385 1.45898 0.96124 0.81795 0.90703 1.26191 0.98369 0.95679 1.03122 1.70203 1.50020 1.06518 1.31618 0.84723 0.77918 0.78466 0.76323 1.17918 1.20281 1.20284 0.90626 0.92619 0.90877 0.85904 0.87308 0.91818 0.89695 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 9.19 71.98 0.66 -3.33 15 2 C -0.04 -1.42 3.55 31.03 0.11 -1.31 15 3 H 0.08 3.48 8.10 -2.38 -0.02 3.46 15 4 S -0.30 -9.81 22.70 -56.49 -1.28 -11.09 15 5 C -0.05 -1.45 7.38 72.71 0.54 -0.92 15 6 C -0.14 -5.24 6.11 31.67 0.19 -5.05 15 7 C 0.09 3.67 2.64 31.37 0.08 3.75 15 8 H 0.05 2.25 7.50 -2.39 -0.02 2.23 15 9 O -0.32 -17.95 9.43 -81.94 -0.77 -18.72 15 10 C -0.37 -21.36 9.79 67.91 0.66 -20.70 15 11 H 0.08 3.97 7.64 -2.91 -0.02 3.95 15 12 C -0.04 -2.33 5.49 84.82 0.47 -1.86 15 13 N -0.94 -59.21 13.67 21.61 0.30 -58.92 15 14 Si 1.00 44.22 29.55 68.60 2.03 46.25 15 15 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 16 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 19 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 20 H 0.07 2.16 8.13 -2.38 -0.02 2.14 15 21 H 0.12 2.77 8.14 -2.39 -0.02 2.76 15 22 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.06 2.52 8.14 -2.38 -0.02 2.50 15 24 H 0.08 2.97 8.14 -2.38 -0.02 2.95 15 25 H 0.26 15.29 8.31 -92.70 -0.77 14.52 15 Total: -1.00 -66.91 229.35 4.14 -62.77 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.15 Total: 9.13 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 2.72 Total: -29.41 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.30 Total: -58.92 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.77 Total: -18.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -9.81 SS G_CDS: -1.28 Total: -11.09 kcal Total: -66.91 4.14 -62.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034569.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.399 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds