Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47426 * 270.00131 * 3 2 1 5 5 H 1.48504 * 109.46703 * 30.00059 * 3 2 1 6 6 H 1.48494 * 109.46890 * 149.99929 * 3 2 1 7 7 C 1.37880 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00019 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47562 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00592 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46140 * 28.79479 * 11 10 9 13 13 C 1.54015 * 109.72915 * 149.07763 * 11 10 9 14 14 C 1.55132 * 106.98467 * 167.04467 * 13 11 10 15 15 S 1.83458 * 102.20607 * 317.93741 * 14 13 11 16 16 C 1.54276 * 109.60959 * 268.55080 * 11 10 9 17 17 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.47428 * 60.00017 * 9 7 2 19 19 H 1.09001 * 109.47328 * 300.00379 * 9 7 2 20 20 H 1.08998 * 109.88589 * 47.68375 * 13 11 10 21 21 H 1.08995 * 110.00846 * 286.47473 * 13 11 10 22 22 H 1.09004 * 110.85654 * 199.75602 * 14 13 11 23 23 H 1.09004 * 111.03570 * 76.19261 * 14 13 11 24 24 H 1.09002 * 110.40402 * 93.33087 * 16 11 10 25 25 H 1.08998 * 110.39950 * 331.02983 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8754 -0.0032 12 1 0.5956 -4.8157 -0.4979 13 6 2.4641 -5.8792 -0.7491 14 6 1.9198 -7.2970 -0.4329 15 16 1.5515 -7.1800 1.3606 16 6 1.3761 -5.3596 1.4493 17 1 -0.4850 0.8401 0.0004 18 1 0.6247 -2.5563 -0.8920 19 1 0.6240 -2.5575 0.8880 20 1 3.4920 -5.7881 -0.3983 21 1 2.4193 -5.6940 -1.8223 22 1 2.6787 -8.0557 -0.6245 23 1 1.0138 -7.5044 -1.0023 24 1 0.3846 -5.0906 1.8136 25 1 2.1452 -4.9348 2.0945 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038526.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = -61.295753 kcal Electronic energy + Delta-G solvation = -9679.956485 eV Core-core repulsion = 7784.231788 eV Total energy + Delta-G solvation = -1895.724697 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.66890 -34.03735 -32.55486 -28.97023 -27.23363 -24.23199 -22.34697 -20.52062 -16.75716 -16.29382 -16.12436 -14.96931 -14.54844 -13.94476 -13.42564 -12.91270 -12.54712 -12.24352 -11.79762 -11.64950 -11.25171 -10.89063 -10.87484 -10.40440 -10.11496 -9.91454 -9.21492 -8.95609 -8.29665 -7.57068 -6.18073 -4.20681 1.96595 2.51631 3.26422 3.31739 3.36905 4.24919 4.54447 4.80741 5.12736 5.18837 5.19233 5.32000 5.59441 5.66993 5.83088 5.94548 6.21122 6.23950 6.97659 7.30533 7.71191 8.04458 8.41512 8.91247 9.44553 10.93300 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.095959 B = 0.008016 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.722423 B = 3491.975274 C = 3569.936980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.378 6.378 11 C 0.084 3.916 12 H 0.065 0.935 13 C -0.126 4.126 14 C -0.067 4.067 15 S -0.309 6.309 16 C -0.087 4.087 17 H 0.265 0.735 18 H 0.007 0.993 19 H 0.008 0.992 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -10.361 -0.816 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.298 6.298 11 C 0.023 3.977 12 H 0.083 0.917 13 C -0.164 4.164 14 C -0.215 4.215 15 S -0.085 6.085 16 C -0.235 4.235 17 H 0.075 0.925 18 H 0.025 0.975 19 H 0.026 0.974 20 H 0.105 0.895 21 H 0.106 0.894 22 H 0.120 0.880 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.119 -11.034 0.029 11.236 hybrid contribution 0.037 1.751 -0.787 1.920 sum 2.156 -9.283 -0.757 9.560 Atomic orbital electron populations 1.69955 1.06136 1.27328 1.50207 1.24949 0.94985 0.99489 0.94951 0.86316 0.79685 0.82112 0.78292 1.20402 1.21007 1.19559 1.21032 0.94112 0.89216 1.51311 0.91445 1.20339 0.88740 0.83447 0.95605 1.87947 1.35329 1.12172 1.94345 1.22717 0.96574 0.86971 0.91423 0.91725 1.22545 1.01193 0.90854 1.01841 1.24118 1.04071 1.00186 0.93144 1.87351 1.94373 1.12318 1.14432 1.24622 1.06078 0.90706 1.02115 0.92534 0.97480 0.97420 0.89542 0.89418 0.87980 0.89182 0.88743 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.52 -15.00 9.43 -34.44 -0.32 -15.33 15 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 15 9 C 0.19 5.15 5.51 36.00 0.20 5.35 15 10 O -0.38 -8.83 9.98 -35.23 -0.35 -9.18 15 11 C 0.08 1.52 3.05 -25.53 -0.08 1.45 15 12 H 0.06 1.17 7.77 -51.93 -0.40 0.77 15 13 C -0.13 -1.83 6.13 -25.07 -0.15 -1.99 15 14 C -0.07 -0.83 7.38 38.29 0.28 -0.55 15 15 S -0.31 -4.68 23.26 -107.50 -2.50 -7.18 15 16 C -0.09 -1.47 7.01 37.83 0.27 -1.21 15 17 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 18 H 0.01 0.20 8.09 -51.92 -0.42 -0.22 15 19 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 20 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 21 H 0.09 1.18 8.14 -51.93 -0.42 0.75 15 22 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 25 H 0.10 1.82 8.10 -51.93 -0.42 1.40 15 LS Contribution 230.29 15.07 3.47 3.47 Total: -1.00 -29.90 230.29 -6.90 -36.79 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.33 Total: -3.96 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.35 Total: -9.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -2.50 Total: -7.18 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.90 -6.90 -36.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038526.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.502 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds