Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47426 * 270.00131 * 3 2 1 5 5 H 1.48504 * 109.46703 * 30.00059 * 3 2 1 6 6 H 1.48494 * 109.46890 * 149.99929 * 3 2 1 7 7 C 1.37880 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00019 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47562 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00592 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46140 * 28.79479 * 11 10 9 13 13 C 1.54015 * 109.72915 * 149.07763 * 11 10 9 14 14 C 1.55132 * 106.98467 * 167.04467 * 13 11 10 15 15 S 1.83458 * 102.20607 * 317.93741 * 14 13 11 16 16 C 1.54276 * 109.60959 * 268.55080 * 11 10 9 17 17 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.47428 * 60.00017 * 9 7 2 19 19 H 1.09001 * 109.47328 * 300.00379 * 9 7 2 20 20 H 1.08998 * 109.88589 * 47.68375 * 13 11 10 21 21 H 1.08995 * 110.00846 * 286.47473 * 13 11 10 22 22 H 1.09004 * 110.85654 * 199.75602 * 14 13 11 23 23 H 1.09004 * 111.03570 * 76.19261 * 14 13 11 24 24 H 1.09002 * 110.40402 * 93.33087 * 16 11 10 25 25 H 1.08998 * 110.39950 * 331.02983 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8754 -0.0032 12 1 0.5956 -4.8157 -0.4979 13 6 2.4641 -5.8792 -0.7491 14 6 1.9198 -7.2970 -0.4329 15 16 1.5515 -7.1800 1.3606 16 6 1.3761 -5.3596 1.4493 17 1 -0.4850 0.8401 0.0004 18 1 0.6247 -2.5563 -0.8920 19 1 0.6240 -2.5575 0.8880 20 1 3.4920 -5.7881 -0.3983 21 1 2.4193 -5.6940 -1.8223 22 1 2.6787 -8.0557 -0.6245 23 1 1.0138 -7.5044 -1.0023 24 1 0.3846 -5.0906 1.8136 25 1 2.1452 -4.9348 2.0945 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038526.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = -80.115934 kcal Electronic energy + Delta-G solvation = -9680.772590 eV Core-core repulsion = 7784.231788 eV Total energy + Delta-G solvation = -1896.540801 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.33695 -35.67456 -34.53755 -30.35086 -29.27976 -25.63708 -24.34051 -21.90812 -18.71124 -17.93005 -17.60199 -16.63158 -16.35139 -15.39261 -15.11572 -14.53360 -14.09797 -13.62749 -13.34651 -13.05673 -12.87145 -12.79192 -12.58982 -12.19692 -11.68254 -11.35410 -11.24846 -10.85738 -10.29892 -8.77790 -8.35237 -6.48145 0.75054 1.31431 1.39869 1.42100 1.54301 2.32412 2.96505 2.99144 3.55070 3.84396 3.92251 4.09017 4.21200 4.48714 4.59565 4.71148 4.78052 4.92279 5.04161 5.13531 5.51981 5.91046 6.44197 6.74305 7.23794 8.76866 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.095959 B = 0.008016 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.722423 B = 3491.975274 C = 3569.936980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.209 3.791 10 O -0.392 6.392 11 C 0.071 3.929 12 H 0.062 0.938 13 C -0.120 4.120 14 C -0.052 4.052 15 S -0.314 6.314 16 C -0.088 4.088 17 H 0.272 0.728 18 H -0.010 1.010 19 H -0.011 1.011 20 H 0.083 0.917 21 H 0.102 0.898 22 H 0.133 0.867 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 -10.749 -1.420 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.081 0.919 9 C 0.134 3.866 10 O -0.312 6.312 11 C 0.011 3.989 12 H 0.081 0.919 13 C -0.158 4.158 14 C -0.199 4.199 15 S -0.090 6.090 16 C -0.237 4.237 17 H 0.080 0.920 18 H 0.008 0.992 19 H 0.007 0.993 20 H 0.102 0.898 21 H 0.121 0.879 22 H 0.151 0.849 23 H 0.128 0.872 24 H 0.108 0.892 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.905 -11.453 -0.576 11.830 hybrid contribution -0.235 1.762 -0.612 1.880 sum 2.670 -9.692 -1.188 10.123 Atomic orbital electron populations 1.70058 1.07759 1.28760 1.50255 1.25941 0.95935 1.03353 0.93773 0.85185 0.78371 0.76998 0.78892 1.19186 1.19984 1.18880 1.21384 0.94188 0.90774 1.52605 0.91897 1.19929 0.88546 0.84398 0.93755 1.87889 1.35222 1.13537 1.94549 1.23119 0.97380 0.85519 0.92845 0.91940 1.22512 1.00163 0.91017 1.02130 1.24270 1.05816 0.99260 0.90593 1.87378 1.94501 1.09666 1.17421 1.24438 1.05395 0.92766 1.01055 0.91959 0.99226 0.99325 0.89812 0.87916 0.84898 0.87239 0.89212 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.92 15 2 C 0.01 0.50 5.46 84.66 0.46 0.97 15 3 Si 0.98 43.79 29.54 68.60 2.03 45.82 15 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 7 C -0.55 -32.45 9.43 25.60 0.24 -32.21 15 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 15 9 C 0.21 11.49 5.51 71.23 0.39 11.88 15 10 O -0.39 -18.66 9.98 -148.98 -1.49 -20.15 15 11 C 0.07 2.58 3.05 31.37 0.10 2.68 15 12 H 0.06 2.28 7.77 -2.38 -0.02 2.26 15 13 C -0.12 -3.26 6.13 31.67 0.19 -3.06 15 14 C -0.05 -1.12 7.38 72.71 0.54 -0.58 15 15 S -0.31 -8.99 23.26 -56.49 -1.31 -10.30 15 16 C -0.09 -3.01 7.01 72.41 0.51 -2.50 15 17 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 18 H -0.01 -0.57 8.09 -2.38 -0.02 -0.59 15 19 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 15 20 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 21 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.13 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.09 3.08 8.14 -2.39 -0.02 3.06 15 25 H 0.09 3.26 8.10 -2.39 -0.02 3.24 15 Total: -1.00 -63.85 230.29 3.10 -60.76 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: 1.15 Total: 1.62 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 2.43 Total: -22.82 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.28 Total: -54.92 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.49 Total: -20.15 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.31 Total: -10.30 kcal Total: -63.85 3.10 -60.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038526.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.358 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds