Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00302 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00349 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00052 * 3 2 1 7 7 C 1.38642 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99741 * 0.27848 * 7 2 1 10 10 C 1.42902 * 116.99891 * 179.72203 * 9 7 2 11 11 H 1.08997 * 109.47154 * 29.99928 * 10 9 7 12 12 C 1.53003 * 109.46958 * 149.99512 * 10 9 7 13 13 C 1.53000 * 109.46757 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47264 * 299.99938 * 13 12 10 15 15 C 1.52998 * 109.46872 * 60.00436 * 14 13 12 16 16 H 1.08997 * 109.47336 * 180.02562 * 15 14 13 17 17 F 1.39891 * 109.47384 * 59.99805 * 15 14 13 18 18 C 1.52999 * 109.47004 * 269.99814 * 10 9 7 19 19 H 0.97005 * 119.99691 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47189 * 300.00074 * 12 10 9 21 21 H 1.08997 * 109.46849 * 60.00229 * 12 10 9 22 22 H 1.08997 * 109.47387 * 60.00396 * 13 12 10 23 23 H 1.09005 * 109.46808 * 180.02562 * 13 12 10 24 24 H 1.08999 * 109.47253 * 180.02562 * 14 13 12 25 25 H 1.09006 * 109.47031 * 300.00538 * 14 13 12 26 26 H 1.08995 * 109.46943 * 299.99354 * 18 10 9 27 27 H 1.08993 * 109.47361 * 59.99975 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4400 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3342 -2.3691 -0.0067 10 6 2.1125 -3.5676 -0.0131 11 1 3.0567 -3.3904 0.5017 12 6 1.3425 -4.6795 0.7024 13 6 2.1760 -5.9625 0.6961 14 6 2.4543 -6.3829 -0.7484 15 6 3.2242 -5.2710 -1.4638 16 1 3.4221 -5.5703 -2.4931 17 9 4.4359 -5.0431 -0.8029 18 6 2.3902 -3.9877 -1.4578 19 1 -0.4850 0.8401 0.0004 20 1 1.1447 -4.3801 1.7317 21 1 0.3982 -4.8567 0.1876 22 1 3.1201 -5.7849 1.2111 23 1 1.6273 -6.7547 1.2055 24 1 3.0477 -7.2971 -0.7529 25 1 1.5101 -6.5604 -1.2635 26 1 1.4459 -4.1650 -1.9725 27 1 2.9387 -3.1956 -1.9675 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261039991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -107.999143 kcal Electronic energy + Delta-G solvation = -11991.896970 eV Core-core repulsion = 9663.766980 eV Total energy + Delta-G solvation = -2328.129990 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.28763 -37.73372 -35.08215 -31.65981 -30.02024 -28.94921 -24.48531 -22.21764 -21.64374 -19.22810 -17.47763 -16.33389 -15.17531 -14.98536 -14.71991 -14.24077 -13.80338 -13.32302 -12.47632 -12.25501 -12.14731 -11.79588 -11.30078 -11.11000 -10.97711 -10.66171 -10.37660 -10.33804 -10.24959 -9.65156 -9.30378 -9.00973 -7.93798 -5.91606 -3.54479 3.33544 3.36499 3.40456 4.32963 4.84254 4.90884 4.98729 5.13020 5.40071 5.47383 5.60741 5.74282 5.81012 5.93671 5.98866 6.11349 6.29686 6.41592 6.53931 6.58096 6.82456 6.98947 7.00682 7.52576 8.47292 9.52320 10.21188 11.29532 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.062682 B = 0.010709 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.590873 B = 2614.000688 C = 2845.789782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.021 3.979 3 Si 0.923 3.077 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.358 4.358 8 H 0.062 0.938 9 O -0.286 6.286 10 C 0.099 3.901 11 H 0.044 0.956 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.144 4.144 15 C 0.093 3.907 16 H 0.075 0.925 17 F -0.216 7.216 18 C -0.165 4.165 19 H 0.257 0.743 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -10.388 -1.682 11.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.750 3.250 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.437 4.437 8 H 0.080 0.920 9 O -0.201 6.201 10 C 0.040 3.960 11 H 0.062 0.938 12 C -0.153 4.153 13 C -0.153 4.153 14 C -0.181 4.181 15 C 0.057 3.943 16 H 0.093 0.907 17 F -0.198 7.198 18 C -0.203 4.203 19 H 0.067 0.933 20 H 0.085 0.915 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.389 -10.268 -1.658 11.289 hybrid contribution 0.761 0.852 -0.095 1.147 sum 5.150 -9.415 -1.753 10.874 Atomic orbital electron populations 1.70020 1.05382 1.25813 1.52208 1.24940 0.95644 0.97680 0.99381 0.85992 0.78746 0.82187 0.78044 1.20760 1.20919 1.20031 1.20903 0.90150 0.82797 1.49829 0.91989 1.85677 1.31623 1.10245 1.92533 1.21643 0.94378 0.87839 0.92189 0.93809 1.21570 0.98852 0.93525 1.01354 1.21470 1.00639 0.97579 0.95651 1.22125 1.00901 0.97530 0.97580 1.21597 0.80741 0.96956 0.95039 0.90730 1.92764 1.47515 1.96036 1.83439 1.22703 1.00251 0.95782 1.01592 0.93292 0.91506 0.91664 0.91654 0.91772 0.91495 0.90264 0.90237 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.31 13.67 55.48 0.76 -27.55 15 2 C 0.02 0.64 5.49 -17.51 -0.10 0.54 15 3 Si 0.92 22.49 29.55 -169.99 -5.02 17.46 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 7 C -0.36 -10.69 9.77 30.88 0.30 -10.39 15 8 H 0.06 1.77 7.65 -52.49 -0.40 1.37 15 9 O -0.29 -8.28 9.43 -16.50 -0.16 -8.44 15 10 C 0.10 2.23 2.53 -26.73 -0.07 2.16 15 11 H 0.04 1.02 7.46 -51.93 -0.39 0.64 15 12 C -0.12 -2.15 5.57 -26.73 -0.15 -2.30 15 13 C -0.12 -1.70 5.80 -26.73 -0.16 -1.86 15 14 C -0.14 -1.91 5.72 -26.73 -0.15 -2.06 15 15 C 0.09 1.44 4.12 -26.70 -0.11 1.33 15 16 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 17 F -0.22 -3.83 16.04 2.25 0.04 -3.80 15 18 C -0.17 -3.18 5.34 -26.70 -0.14 -3.32 15 19 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 20 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 21 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.06 0.99 7.80 -51.93 -0.41 0.59 15 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 27 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 LS Contribution 230.72 15.07 3.48 3.48 Total: -1.00 -32.86 230.72 -5.19 -38.05 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -3.71 Total: -3.31 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.57 Total: -15.90 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.76 Total: -27.55 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.16 Total: -8.44 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.86 -5.19 -38.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261039991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.946 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds