Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00302 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00349 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00052 * 3 2 1 7 7 C 1.38642 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99741 * 0.27848 * 7 2 1 10 10 C 1.42902 * 116.99891 * 179.72203 * 9 7 2 11 11 H 1.08997 * 109.47154 * 29.99928 * 10 9 7 12 12 C 1.53003 * 109.46958 * 149.99512 * 10 9 7 13 13 C 1.53000 * 109.46757 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47264 * 299.99938 * 13 12 10 15 15 C 1.52998 * 109.46872 * 60.00436 * 14 13 12 16 16 H 1.08997 * 109.47336 * 180.02562 * 15 14 13 17 17 F 1.39891 * 109.47384 * 59.99805 * 15 14 13 18 18 C 1.52999 * 109.47004 * 269.99814 * 10 9 7 19 19 H 0.97005 * 119.99691 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47189 * 300.00074 * 12 10 9 21 21 H 1.08997 * 109.46849 * 60.00229 * 12 10 9 22 22 H 1.08997 * 109.47387 * 60.00396 * 13 12 10 23 23 H 1.09005 * 109.46808 * 180.02562 * 13 12 10 24 24 H 1.08999 * 109.47253 * 180.02562 * 14 13 12 25 25 H 1.09006 * 109.47031 * 300.00538 * 14 13 12 26 26 H 1.08995 * 109.46943 * 299.99354 * 18 10 9 27 27 H 1.08993 * 109.47361 * 59.99975 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4400 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3342 -2.3691 -0.0067 10 6 2.1125 -3.5676 -0.0131 11 1 3.0567 -3.3904 0.5017 12 6 1.3425 -4.6795 0.7024 13 6 2.1760 -5.9625 0.6961 14 6 2.4543 -6.3829 -0.7484 15 6 3.2242 -5.2710 -1.4638 16 1 3.4221 -5.5703 -2.4931 17 9 4.4359 -5.0431 -0.8029 18 6 2.3902 -3.9877 -1.4578 19 1 -0.4850 0.8401 0.0004 20 1 1.1447 -4.3801 1.7317 21 1 0.3982 -4.8567 0.1876 22 1 3.1201 -5.7849 1.2111 23 1 1.6273 -6.7547 1.2055 24 1 3.0477 -7.2971 -0.7529 25 1 1.5101 -6.5604 -1.2635 26 1 1.4459 -4.1650 -1.9725 27 1 2.9387 -3.1956 -1.9675 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261039991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -129.642454 kcal Electronic energy + Delta-G solvation = -11992.835494 eV Core-core repulsion = 9663.766980 eV Total energy + Delta-G solvation = -2329.068514 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.61312 -39.43357 -36.85126 -33.85221 -31.42133 -30.50067 -26.71513 -23.60181 -23.15314 -20.69460 -19.61862 -17.96471 -16.77837 -16.44984 -16.29933 -15.78589 -15.57183 -14.99632 -14.18553 -13.87777 -13.66048 -13.28199 -13.21404 -12.82802 -12.48438 -12.21289 -12.05026 -11.97445 -11.78192 -11.21141 -11.13744 -10.87824 -10.11230 -8.19272 -5.87926 1.37191 1.43610 1.52952 2.31350 3.12838 3.48370 3.64681 3.68724 3.88532 4.07532 4.21699 4.36573 4.44293 4.49069 4.59984 4.71494 5.01631 5.08528 5.09659 5.18412 5.22011 5.22618 5.43312 5.49264 6.20560 7.23922 8.05364 9.05500 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.062682 B = 0.010709 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.590873 B = 2614.000688 C = 2845.789782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.042 4.042 3 Si 1.002 2.998 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.374 4.374 8 H 0.064 0.936 9 O -0.328 6.328 10 C 0.086 3.914 11 H 0.024 0.976 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.139 4.139 15 C 0.093 3.907 16 H 0.111 0.889 17 F -0.230 7.230 18 C -0.161 4.161 19 H 0.261 0.739 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -11.462 -2.174 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.235 4.235 3 Si 0.824 3.176 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.081 0.919 9 O -0.244 6.244 10 C 0.028 3.972 11 H 0.043 0.957 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.176 4.176 15 C 0.057 3.943 16 H 0.129 0.871 17 F -0.212 7.212 18 C -0.199 4.199 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.114 0.886 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.316 -11.374 -2.151 12.738 hybrid contribution 0.471 1.116 0.068 1.213 sum 5.787 -10.258 -2.083 11.961 Atomic orbital electron populations 1.70181 1.07449 1.27202 1.53571 1.26180 0.96767 1.01849 0.98669 0.84807 0.77591 0.76449 0.78724 1.19416 1.20057 1.18688 1.21298 0.90416 0.83811 1.49718 0.91855 1.85596 1.33964 1.11725 1.93065 1.22027 0.93608 0.86867 0.94745 0.95745 1.21577 0.99271 0.94272 0.99800 1.21460 0.99798 0.95975 0.97451 1.22164 1.01965 0.97525 0.95955 1.21785 0.79734 0.95344 0.97411 0.87148 1.92742 1.48382 1.96106 1.83932 1.22596 1.01079 0.97499 0.98728 0.93018 0.93047 0.91549 0.92414 0.88596 0.88273 0.88421 0.89763 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.04 13.67 21.61 0.30 -60.75 15 2 C -0.04 -2.53 5.49 84.83 0.47 -2.07 15 3 Si 1.00 46.49 29.55 68.60 2.03 48.52 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.26 -11.51 7.11 99.48 0.71 -10.81 15 7 C -0.37 -22.99 9.77 67.92 0.66 -22.33 15 8 H 0.06 3.73 7.65 -2.91 -0.02 3.71 15 9 O -0.33 -19.71 9.43 -81.94 -0.77 -20.48 15 10 C 0.09 3.96 2.53 30.60 0.08 4.03 15 11 H 0.02 1.19 7.46 -2.39 -0.02 1.17 15 12 C -0.11 -4.14 5.57 30.60 0.17 -3.97 15 13 C -0.11 -2.94 5.80 30.60 0.18 -2.76 15 14 C -0.14 -3.15 5.72 30.59 0.17 -2.97 15 15 C 0.09 2.66 4.12 30.61 0.13 2.79 15 16 H 0.11 2.44 8.14 -2.39 -0.02 2.42 15 17 F -0.23 -7.79 16.04 44.97 0.72 -7.07 15 18 C -0.16 -6.17 5.34 30.61 0.16 -6.00 15 19 H 0.26 15.73 8.31 -92.70 -0.77 14.96 15 20 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.06 1.65 7.80 -2.39 -0.02 1.63 15 23 H 0.10 2.02 8.14 -2.38 -0.02 2.00 15 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.10 1.92 8.14 -2.38 -0.02 1.90 15 26 H 0.08 3.11 8.14 -2.39 -0.02 3.09 15 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -73.00 230.72 5.43 -67.57 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.14 Total: 5.49 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 2.02 Total: -33.29 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.30 Total: -60.75 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.77 Total: -20.48 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 0.72 Total: -7.07 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.00 5.43 -67.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261039991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.068 kcal (2) G-P(sol) polarization free energy of solvation -73.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds