Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.49011 * 300.00063 * 9 7 2 11 11 C 1.53054 * 109.49066 * 179.97438 * 9 7 2 12 12 N 1.46953 * 109.36539 * 181.63349 * 11 9 7 13 13 C 1.46901 * 110.99802 * 183.19002 * 12 11 9 14 14 F 1.39905 * 109.46974 * 204.99975 * 13 12 11 15 15 C 1.46953 * 110.88439 * 59.31970 * 12 11 9 16 16 C 1.53054 * 109.36266 * 300.68191 * 15 12 11 17 17 N 1.46947 * 109.38460 * 58.38420 * 16 15 12 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.48551 * 301.60308 * 11 9 7 20 20 H 1.09003 * 109.48661 * 61.66106 * 11 9 7 21 21 H 1.09006 * 109.47187 * 324.99640 * 13 12 11 22 22 H 1.09003 * 109.47547 * 84.99871 * 13 12 11 23 23 H 1.08994 * 109.48752 * 60.64327 * 15 12 11 24 24 H 1.08998 * 109.48831 * 180.71144 * 15 12 11 25 25 H 1.08994 * 109.48818 * 178.37190 * 16 15 12 26 26 H 1.09008 * 109.48405 * 298.43025 * 16 15 12 27 27 H 1.00907 * 111.01845 * 176.83024 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6246 -2.5574 0.8896 11 6 2.2452 -3.6629 -0.0018 12 7 1.5080 -4.9335 -0.0413 13 6 2.4266 -6.0775 0.0325 14 9 1.8273 -7.1955 -0.5576 15 6 0.6640 -5.0124 -1.2418 16 6 -0.3301 -3.8487 -1.2405 17 7 0.4066 -2.5778 -1.2006 18 1 -0.4850 0.8401 0.0004 19 1 2.8901 -3.5891 -0.8775 20 1 2.8530 -3.6229 0.9022 21 1 3.3488 -5.8378 -0.4968 22 1 2.6528 -6.2951 1.0764 23 1 1.2909 -4.9540 -2.1315 24 1 0.1191 -5.9563 -1.2417 25 1 -0.9379 -3.8886 -2.1444 26 1 -0.9750 -3.9224 -0.3647 27 1 -0.2243 -1.7920 -1.2510 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046462.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = -63.123033 kcal Electronic energy + Delta-G solvation = -12031.052197 eV Core-core repulsion = 9737.160932 eV Total energy + Delta-G solvation = -2293.891264 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.71936 -39.60163 -35.61880 -33.92092 -31.78390 -28.16994 -26.97719 -24.37600 -23.23455 -20.57381 -18.77559 -17.57233 -17.10269 -16.97262 -16.50226 -15.93175 -15.45766 -14.94468 -14.69236 -14.27039 -13.79286 -13.39602 -12.79522 -12.68347 -12.63537 -12.30415 -12.19915 -11.87734 -11.30205 -11.13894 -10.66471 -9.42524 -8.86555 -8.18769 -6.30644 1.45426 1.47409 1.54942 2.41885 2.81376 3.08269 3.73571 3.91789 4.03430 4.16494 4.24611 4.34776 4.53202 4.64334 4.69331 4.84387 4.98981 5.09216 5.39642 5.72817 5.90802 5.91413 6.18021 6.59379 6.92677 7.04795 7.41562 8.91081 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.075000 B = 0.010622 C = 0.009628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.241274 B = 2635.370804 C = 2907.411022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.020 3.980 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.218 3.782 10 H -0.036 1.036 11 C 0.083 3.917 12 N -0.582 5.582 13 C 0.228 3.772 14 F -0.219 7.219 15 C 0.065 3.935 16 C 0.054 3.946 17 N -0.695 5.695 18 H 0.266 0.734 19 H 0.032 0.968 20 H 0.079 0.921 21 H 0.063 0.937 22 H 0.112 0.888 23 H 0.035 0.965 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.008 0.992 27 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -7.720 -0.940 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.110 3.890 10 H -0.018 1.018 11 C -0.045 4.045 12 N -0.311 5.311 13 C 0.085 3.915 14 F -0.201 7.201 15 C -0.062 4.062 16 C -0.076 4.076 17 N -0.331 5.331 18 H 0.075 0.925 19 H 0.050 0.950 20 H 0.097 0.903 21 H 0.080 0.920 22 H 0.129 0.871 23 H 0.053 0.947 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.026 0.974 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.484 -7.896 -0.945 8.682 hybrid contribution -0.108 1.073 0.042 1.079 sum 3.375 -6.823 -0.903 7.666 Atomic orbital electron populations 1.69794 1.07405 1.28010 1.51352 1.25800 0.95744 1.02770 0.93613 0.85460 0.78191 0.78183 0.78824 1.21011 1.19440 1.19684 1.21418 0.93433 0.91244 1.51097 0.91908 1.18936 0.90699 0.92381 0.86999 1.01843 1.22090 0.95412 0.86931 1.00043 1.62678 1.23986 1.03440 1.41007 1.22834 0.91343 0.77586 0.99699 1.92728 1.86239 1.54510 1.86611 1.22018 0.95436 0.98656 0.90137 1.21985 0.94999 0.91229 0.99382 1.60996 1.26492 1.03728 1.41844 0.92455 0.94952 0.90302 0.91961 0.87065 0.94677 0.89081 0.90049 0.97373 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.47 11.49 21.45 0.25 -52.22 15 2 C 0.02 1.09 5.35 84.66 0.45 1.54 15 3 Si 0.97 42.81 29.54 68.60 2.03 44.83 15 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.53 -29.17 8.76 25.60 0.22 -28.94 15 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 15 9 C 0.22 11.28 2.55 44.17 0.11 11.39 15 10 H -0.04 -2.11 8.14 -2.38 -0.02 -2.13 15 11 C 0.08 3.49 4.68 86.31 0.40 3.89 15 12 N -0.58 -21.69 4.97 -919.03 -4.56 -26.25 15 13 C 0.23 6.50 7.95 127.69 1.02 7.51 15 14 F -0.22 -6.54 15.74 44.97 0.71 -5.84 15 15 C 0.07 2.40 5.19 86.31 0.45 2.85 15 16 C 0.05 2.25 6.72 86.31 0.58 2.83 15 17 N -0.70 -34.56 6.53 -495.03 -3.23 -37.79 15 18 H 0.27 14.34 8.31 -92.71 -0.77 13.57 15 19 H 0.03 1.37 8.12 -2.39 -0.02 1.35 15 20 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15 21 H 0.06 1.60 7.84 -2.38 -0.02 1.58 15 22 H 0.11 2.64 8.14 -2.39 -0.02 2.62 15 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.09 2.99 7.20 -2.39 -0.02 2.98 15 25 H 0.08 2.96 8.14 -2.39 -0.02 2.94 15 26 H 0.01 0.36 8.14 -2.38 -0.02 0.34 15 27 H 0.35 18.93 6.72 -89.69 -0.60 18.33 15 Total: -1.00 -59.48 225.58 -1.03 -60.50 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.55 Total: 15.69 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 3.24 Total: 1.08 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -7.55 Total: -116.27 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.71 Total: -5.84 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -59.48 -1.03 -60.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046462.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.621 kcal (2) G-P(sol) polarization free energy of solvation -59.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds