Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86803 * 120.00228 * 2 1 4 4 H 1.48498 * 109.47169 * 269.99695 * 3 2 1 5 5 H 1.48497 * 109.47209 * 29.99601 * 3 2 1 6 6 H 1.48504 * 109.47007 * 150.00164 * 3 2 1 7 7 C 1.40340 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.39801 * 120.00203 * 0.02562 * 7 2 1 10 10 N 1.32810 * 125.79774 * 179.97438 * 9 7 2 11 11 C 1.33065 * 108.64417 * 179.76423 * 10 9 7 12 12 C 1.50705 * 126.00846 * 180.30532 * 11 10 9 13 13 F 1.39895 * 109.47287 * 30.15305 * 12 11 10 14 14 F 1.39900 * 109.47202 * 150.15696 * 12 11 10 15 15 C 1.35931 * 107.98427 * 0.44028 * 11 10 9 16 16 O 1.34596 * 107.35600 * 359.56576 * 15 11 10 17 17 H 0.97002 * 119.99610 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.46917 * 270.15613 * 12 11 10 19 19 H 1.08002 * 126.32545 * 179.83533 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 -1.4000 5 1 1.4378 2.6527 0.6999 6 1 3.5379 1.4401 0.7000 7 6 2.0079 -1.2154 0.0005 8 1 3.0879 -1.2154 0.0010 9 6 1.3088 -2.4261 0.0005 10 7 1.8533 -3.6375 0.0005 11 6 0.8777 -4.5424 0.0057 12 6 1.0571 -6.0387 0.0141 13 9 2.2451 -6.3622 0.6783 14 9 -0.0232 -6.6342 0.6739 15 6 -0.3092 -3.8799 -0.0009 16 8 -0.0337 -2.5624 -0.0004 17 1 -0.4850 0.8401 -0.0004 18 1 1.1030 -6.4048 -1.0116 19 1 -1.2920 -4.3279 -0.0015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144712.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = -123.494757 kcal Electronic energy + Delta-G solvation = -11276.239520 eV Core-core repulsion = 8622.718280 eV Total energy + Delta-G solvation = -2653.521240 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.91397 -47.94571 -43.15711 -35.81628 -35.09043 -31.78141 -28.62638 -26.56232 -22.90299 -21.99295 -19.81849 -18.44188 -18.02826 -17.68080 -17.11520 -16.57883 -16.31376 -15.07960 -14.84903 -14.36904 -14.31570 -13.66073 -13.40867 -13.01770 -12.89848 -12.30182 -11.97638 -11.72478 -11.34425 -10.83413 -9.68861 -8.90159 -6.85751 0.94830 1.40084 1.43643 1.58752 2.01103 2.16260 2.64710 2.92216 3.10593 3.28317 3.71244 4.06839 4.56697 4.77317 4.99718 5.48136 5.66608 6.01446 6.42429 6.47479 7.58710 8.14407 Molecular weight = 189.03amu Principal moments of inertia in cm(-1) A = 0.093056 B = 0.010366 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.821014 B = 2700.484579 C = 2961.364839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.028 3.972 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.252 1.252 7 C -0.457 4.457 8 H 0.115 0.885 9 C 0.315 3.685 10 N -0.626 5.626 11 C -0.088 4.088 12 C 0.367 3.633 13 F -0.208 7.208 14 F -0.201 7.201 15 C -0.172 4.172 16 O -0.205 6.205 17 H 0.301 0.699 18 H 0.164 0.836 19 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -2.133 -1.489 2.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.192 4.192 3 Si 0.835 3.165 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.176 1.176 7 C -0.492 4.492 8 H 0.133 0.867 9 C 0.132 3.868 10 N -0.360 5.360 11 C -0.212 4.212 12 C 0.313 3.687 13 F -0.190 7.190 14 F -0.182 7.182 15 C -0.247 4.247 16 O -0.097 6.097 17 H 0.112 0.888 18 H 0.181 0.819 19 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.000 -2.157 -1.453 2.601 hybrid contribution -0.705 0.433 0.208 0.853 sum -0.705 -1.724 -1.245 2.240 Atomic orbital electron populations 1.69737 1.09451 1.32271 1.31881 1.27270 0.95955 1.05590 0.90406 0.84664 0.78564 0.73084 0.80153 1.17768 1.18388 1.17562 1.18888 0.95453 0.86586 1.48246 0.86707 1.22678 0.77061 0.94241 0.92861 1.70735 1.31838 0.98280 1.35189 1.22495 0.91691 0.97224 1.09773 1.19661 0.70422 0.84844 0.93770 1.92936 1.48517 1.93373 1.84152 1.92953 1.56261 1.84521 1.84468 1.24859 1.00408 0.81524 1.17901 1.84851 1.26782 1.25156 1.72922 0.88804 0.81934 0.76289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.70 11.98 21.89 0.26 -41.44 13 2 C 0.03 1.36 5.50 85.38 0.47 1.83 13 3 Si 1.02 35.96 29.56 68.60 2.03 37.99 13 4 H -0.25 -8.47 7.11 99.48 0.71 -7.76 13 5 H -0.26 -8.54 7.11 99.48 0.71 -7.83 13 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 13 7 C -0.46 -25.18 9.45 23.16 0.22 -24.96 13 8 H 0.12 6.03 7.85 -2.91 -0.02 6.01 13 9 C 0.32 18.50 7.66 84.92 0.65 19.15 13 10 N -0.63 -35.38 11.29 -297.41 -3.36 -38.74 13 11 C -0.09 -4.24 6.73 41.84 0.28 -3.96 13 12 C 0.37 13.52 5.83 71.24 0.42 13.93 13 13 F -0.21 -8.48 17.28 44.97 0.78 -7.70 13 14 F -0.20 -6.96 17.04 44.97 0.77 -6.20 13 15 C -0.17 -8.28 11.80 67.28 0.79 -7.49 13 16 O -0.20 -11.70 9.06 -11.79 -0.11 -11.81 13 17 H 0.30 13.63 8.29 -92.71 -0.77 12.86 13 18 H 0.16 4.46 8.14 -2.38 -0.02 4.44 13 19 H 0.22 8.38 8.06 -2.91 -0.02 8.36 13 Total: -1.00 -65.75 196.85 4.48 -61.26 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.29 Total: 8.12 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 2.83 Total: -1.49 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -3.10 Total: -80.18 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.11 Total: -11.81 kcal Atomic # 9 Polarization: -15.44 SS G_CDS: 1.54 Total: -13.90 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -65.75 4.48 -61.26 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144712.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.232 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds