Wall clock time and date at job start Mon Mar 30 2020 02:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86800 * 119.99916 * 2 1 4 4 H 1.48494 * 109.47091 * 274.98119 * 3 2 1 5 5 H 1.48500 * 109.47162 * 34.97872 * 3 2 1 6 6 H 1.48497 * 109.47532 * 154.97726 * 3 2 1 7 7 C 1.40340 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99527 * 186.05237 * 7 2 1 9 9 C 1.39793 * 120.00157 * 6.05811 * 7 2 1 10 10 N 1.32820 * 125.79721 * 354.18017 * 9 7 2 11 11 C 1.33061 * 108.64590 * 180.02562 * 10 9 7 12 12 C 1.35936 * 107.98401 * 359.97438 * 11 10 9 13 13 C 1.50694 * 126.32005 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47445 * 300.02474 * 13 12 11 15 15 F 1.39901 * 109.47190 * 60.02819 * 13 12 11 16 16 O 1.34594 * 107.35787 * 0.02562 * 12 11 10 17 17 H 0.97000 * 120.00374 * 0.02562 * 1 2 3 18 18 H 1.08003 * 126.00421 * 179.97438 * 11 10 9 19 19 H 1.09005 * 109.47274 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3824 2.1072 -1.3947 5 1 1.4942 2.6200 0.8026 6 1 3.5864 1.4122 0.5922 7 6 2.0079 -1.2154 0.0005 8 1 3.0835 -1.2178 0.0992 9 6 1.3149 -2.4227 -0.1267 10 7 -0.0059 -2.5621 -0.1456 11 6 -0.2954 -3.8539 -0.2796 12 6 0.8752 -4.5416 -0.3470 13 6 1.0266 -6.0330 -0.5008 14 9 0.4131 -6.6779 0.5785 15 9 0.4215 -6.4426 -1.6939 16 8 1.8740 -3.6446 -0.2510 17 1 -0.4851 0.8400 -0.0004 18 1 -1.2864 -4.2808 -0.3266 19 1 2.0856 -6.2903 -0.5236 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261154940.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:34 Heat of formation + Delta-G solvation = -114.884705 kcal Electronic energy + Delta-G solvation = -11256.686192 eV Core-core repulsion = 8603.538312 eV Total energy + Delta-G solvation = -2653.147881 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.93526 -47.95340 -43.13561 -36.00615 -34.67179 -31.94425 -29.18268 -25.73428 -23.16297 -22.08006 -19.64428 -18.40205 -18.28393 -17.93856 -17.42600 -16.61227 -15.87909 -14.86347 -14.85672 -14.35905 -14.14630 -13.92056 -13.46838 -13.07837 -12.79239 -12.27186 -11.97389 -11.81931 -11.26657 -10.42622 -9.70075 -8.74115 -6.90151 0.78921 1.40128 1.51518 1.60155 2.01616 2.25345 2.28945 3.08654 3.15023 3.82844 3.95415 4.07485 4.14139 4.66188 4.99970 5.50589 5.69848 5.98720 6.33546 6.54019 7.70567 8.21954 Molecular weight = 189.03amu Principal moments of inertia in cm(-1) A = 0.102188 B = 0.009852 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.938930 B = 2841.322165 C = 2938.424894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.026 3.974 3 Si 1.021 2.979 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.246 1.246 7 C -0.451 4.451 8 H 0.112 0.888 9 C 0.308 3.692 10 N -0.579 5.579 11 C 0.035 3.965 12 C -0.308 4.308 13 C 0.391 3.609 14 F -0.202 7.202 15 F -0.202 7.202 16 O -0.246 6.246 17 H 0.294 0.706 18 H 0.173 0.827 19 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 -2.543 -0.560 4.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.197 4.197 3 Si 0.838 3.162 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.169 1.169 7 C -0.484 4.484 8 H 0.130 0.870 9 C 0.128 3.872 10 N -0.310 5.310 11 C -0.113 4.113 12 C -0.363 4.363 13 C 0.337 3.663 14 F -0.183 7.183 15 F -0.183 7.183 16 O -0.144 6.144 17 H 0.105 0.895 18 H 0.190 0.810 19 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.007 -1.951 -0.498 3.619 hybrid contribution 0.170 -0.246 -0.071 0.307 sum 3.177 -2.197 -0.569 3.904 Atomic orbital electron populations 1.70066 1.09540 1.31162 1.27596 1.27239 0.95950 1.04841 0.91625 0.84630 0.78762 0.73022 0.79804 1.18208 1.18575 1.16916 1.18923 0.96290 0.86487 1.46723 0.87037 1.22972 0.87366 0.84105 0.92741 1.71465 1.12683 1.15939 1.30897 1.23508 0.98705 0.91096 0.98011 1.23269 0.88010 0.93353 1.31633 1.18696 0.95343 0.81550 0.70679 1.92975 1.86532 1.82260 1.56560 1.92975 1.86852 1.90848 1.47638 1.84310 1.36596 1.17267 1.76223 0.89512 0.81021 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.60 11.91 21.89 0.26 -40.34 13 2 C 0.03 1.30 5.49 85.38 0.47 1.77 13 3 Si 1.02 35.51 29.57 68.60 2.03 37.54 13 4 H -0.26 -8.59 7.11 99.48 0.71 -7.88 13 5 H -0.26 -8.57 7.11 99.48 0.71 -7.87 13 6 H -0.25 -8.02 7.11 99.48 0.71 -7.32 13 7 C -0.45 -24.27 9.45 23.16 0.22 -24.05 13 8 H 0.11 5.43 7.86 -2.91 -0.02 5.41 13 9 C 0.31 17.97 7.73 84.92 0.66 18.63 13 10 N -0.58 -34.42 9.45 -309.37 -2.92 -37.35 13 11 C 0.04 1.82 11.81 83.97 0.99 2.81 13 12 C -0.31 -14.84 6.85 25.15 0.17 -14.67 13 13 C 0.39 14.14 5.79 71.23 0.41 14.55 13 14 F -0.20 -7.29 17.32 44.97 0.78 -6.51 13 15 F -0.20 -7.29 17.32 44.97 0.78 -6.51 13 16 O -0.25 -13.26 10.82 -11.78 -0.13 -13.39 13 17 H 0.29 13.82 8.29 -92.71 -0.77 13.05 13 18 H 0.17 7.79 8.06 -2.91 -0.02 7.77 13 19 H 0.15 4.30 8.14 -2.38 -0.02 4.28 13 Total: -1.00 -65.08 197.18 5.00 -60.08 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.29 Total: 7.44 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 2.92 Total: -0.97 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -2.66 Total: -77.69 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.13 Total: -13.39 kcal Atomic # 9 Polarization: -14.57 SS G_CDS: 1.56 Total: -13.02 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -65.08 5.00 -60.08 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154940.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.806 kcal (2) G-P(sol) polarization free energy of solvation -65.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds